RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	ANKRD53	Q8N9V6	530 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293	LPP	Q93052	612 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	3.42	□□□□□ -1.86
CD44-216	ENST00000525293	WDR92	Q96MX6	357 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293	GPR101	Q96P66	508 aa	Predicted RBP	3.42	□□□□□ -1.86
CD44-216	ENST00000525293	GPHA2	Q96T91	129 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293	TARS2	Q9BW92	718 aa	Known RBP	3.42	□□□□□ -1.86
CD44-216	ENST00000525293	ZMAT4	Q9H898	229 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293	POLR3B	Q9NW08	1133 aa	Predicted RBP	3.42	□□□□□ -1.86
CD44-216	ENST00000525293	SYNPO2	Q9UMS6	1093 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293	HS3ST3A1	Q9Y663	406 aa		3.42	□□□□□ -1.86
CD44-216	ENST00000525293		A0A0A6YYJ9	748 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	CAPN14	A8MX76	684 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	MAFG	O15525	162 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	DAPK3	O43293	454 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	TGM5	O43548	720 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	HNRNPL	P14866	589 aa	Known RBP eCLIP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	CD40	P25942	277 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	KPNA1	P52294	538 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	ADAM8	P78325	824 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	SMAD3	P84022	425 aa	Known RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	DGCR2	P98153	550 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	SART3	Q15020	963 aa	Known RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	SEPT7	Q16181	437 aa	Known RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	DALRD3	Q5D0E6	543 aa	Known RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	SPTY2D1	Q68D10	685 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	KRT40	Q6A162	431 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	KIAA1841	Q6NSI8	718 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	GAREM2	Q75VX8	874 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	KANSL1	Q7Z3B3	1105 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	CLEC14A	Q86T13	490 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	ZFPM1	Q8IX07	1006 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	AHI1	Q8N157	1196 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	EFHB	Q8N7U6	833 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	PLA2G15	Q8NCC3	412 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	IL17D	Q8TAD2	202 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	ZNF503	Q96F45	646 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	ZNF496	Q96IT1	587 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	FEZ1	Q99689	392 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	NOL10	Q9BSC4	688 aa	Known RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	CSRNP2	Q9H175	543 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	MTG2	Q9H4K7	406 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	HECA	Q9UBI9	543 aa	Predicted RBP	3.41	□□□□□ -1.86
CD44-216	ENST00000525293	SRRD	Q9UH36	339 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293	SH3BP1	Q9Y3L3	701 aa		3.41	□□□□□ -1.86
CD44-216	ENST00000525293		A0A0A6YYK5	440 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-216	ENST00000525293	UBE2QL1	A1L167	161 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	NPIPB8	E9PQR5	432 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	ELL2	O00472	640 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-216	ENST00000525293	OPHN1	O60890	802 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	TOX4	O94842	621 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	C1S	P09871	688 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	ACRV1	P26436	265 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	ACVRL1	P37023	503 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	LRRC32	Q14392	662 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	MIIP	Q5JXC2	388 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	USP51	Q70EK9	711 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	THEMIS	Q8N1K5	641 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-216	ENST00000525293	PPM1K	Q8N3J5	372 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	SMC1B	Q8NDV3	1235 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	MFSD3	Q96ES6	412 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	PLEKHG4B	Q96PX9	1271 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	MPHOSPH9	Q99550	1183 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	SOX7	Q9BT81	388 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	PITHD1	Q9GZP4	211 aa	Predicted RBP	3.4	□□□□□ -1.87
CD44-216	ENST00000525293	HAPLN2	Q9GZV7	340 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	SPTLC3	Q9NUV7	552 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	NCDN	Q9UBB6	729 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	MSRA	Q9UJ68	235 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	RCAN3	Q9UKA8	241 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	PLAA	Q9Y263	795 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	GIT1	Q9Y2X7	761 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	MYPN	Q86TC9	1320 aa		3.4	□□□□□ -1.87
CD44-216	ENST00000525293	LCHN	A4D1U4	455 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	PCDH8	O95206	1070 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	JUN	P05412	331 aa	Known RBP	3.39	□□□□□ -1.87
CD44-216	ENST00000525293	VSIG10L2	P0DP72	767 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	KIR2DL3	P43628	341 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	IL2	P60568	153 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	PTH1R	Q03431	593 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	MAN2A1	Q16706	1144 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	LSM12	Q3MHD2	195 aa	Known RBP	3.39	□□□□□ -1.87
CD44-216	ENST00000525293	GAGE13	Q4V321	117 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	IGFL4	Q6B9Z1	124 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	FAM111B	Q6SJ93	734 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	ESPNL	Q6ZVH7	1005 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	3.39	□□□□□ -1.87
CD44-216	ENST00000525293	OR2W6P	Q8NHA6	318 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	LEO1	Q8WVC0	666 aa	Predicted RBP	3.39	□□□□□ -1.87
CD44-216	ENST00000525293	HIST1H2AH	Q96KK5	128 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	SORCS2	Q96PQ0	1159 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	UIMC1	Q96RL1	719 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	HIST1H2AJ	Q99878	128 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	TCF25	Q9BQ70	676 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	MS4A5	Q9H3V2	200 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	IL23A	Q9NPF7	189 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	USP18	Q9UMW8	372 aa		3.39	□□□□□ -1.87
CD44-216	ENST00000525293	PRSS38	A1L453	326 aa		3.38	□□□□□ -1.87
CD44-216	ENST00000525293	CYR61	O00622	381 aa		3.38	□□□□□ -1.87

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