RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 MAFO75444 373 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 BAIAP3O94812 1187 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 STBD1O95210 358 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 IQCF3P0C7M6 154 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 RSPH10BP0C881 870 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 SPATA31C1P0DKV0 1188 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 ACRP10323 421 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 BMP8BP34820 402 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 SMTNP53814 917 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 DMP1Q13316 513 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 HSP90AA2PQ14568 343 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 TARBP2Q15633 366 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 ZNF618Q5T7W0 954 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 PLA2G4FQ68DD2 849 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 EFCAB12Q6NXP0 572 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 KANK3Q6NY19 840 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 STXBP4Q6ZWJ1 553 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 ANO5Q75V66 913 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 SV2BQ7L1I2 683 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 DNAJB3Q8WWF6 145 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 NLRP7Q8WX94 980 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 RSPH1Q8WYR4 309 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 SEPT8Q92599 483 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 VWCEQ96DN2 955 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 FTHL17Q9BXU8 183 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 GCOM2Q9BZD3 368 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 GTPBP4Q9BZE4 634 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 FTOQ9C0B1 505 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 SUGCTQ9HAC7 445 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 IL23AQ9NPF7 189 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 LARSQ9P2J5 1176 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 TFIP11Q9UBB9 837 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 EVPLQ92817 2033 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 TET1Q8NFU7 2136 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 IGKV6-21A0A0C4DH24 114 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 A0A1W2PPC1 479 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 GPR182O15218 404 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PLA2G4BP0C869 781 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 CYP11B2P19099 503 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PLCG1P19174 1290 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 CMA1P23946 247 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 GUCY2CP25092 1073 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 SYKP43405 635 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 CLCN3P51790 818 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 EFNA5P52803 228 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 CRYBB1P53674 252 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 POU5F1BQ06416 359 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PAK2Q13177 524 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 MBTPS1Q14703 1052 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 GPNMBQ14956 572 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 KARSQ15046 597 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 IL17AQ16552 155 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 FAM26DQ5JW98 314 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 C9orf50Q5SZB4 431 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 RESP18Q5W5W9 173 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PADI6Q6TGC4 694 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 TSHZ1Q6ZSZ6 1077 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 C16orf59Q7L2K0 433 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 DEFB128Q7Z7B8 93 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 TDHQ8IZJ6 230 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 SYT2Q8N9I0 419 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PIGOQ8TEQ8 1089 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 RAD54LQ92698 747 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 SH2D3AQ9BRG2 576 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 SUCLA2Q9P2R7 463 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 SEL1LQ9UBV2 794 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PCDHA7Q9UN72 937 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 ZDHHC9Q9Y397 364 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 COL4A3BPQ9Y5P4 624 aa8.58□□□□□ -1.04
LIMCH1-222ENST00000515847 PP2D1A8MPX8 630 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 ZBTB39O15060 712 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 KINO60870 393 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 NBNO60934 754 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 ERLIN2O94905 339 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 FAM13AO94988 1023 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 SKIP12755 728 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 GAP43P17677 238 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 NAMPTP43490 491 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 KCNJ6P48051 423 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 NPEPPSP55786 919 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 UBE2HP62256 183 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 MGAT3Q09327 533 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 TMEM62Q0P6H9 643 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 GRB10Q13322 594 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 ALCAMQ13740 583 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 SHHQ15465 462 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 TMEM240Q5SV17 173 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 FAM102BQ5T8I3 360 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 CNKSR3Q6P9H4 555 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 ZNF365Q70YC5 407 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 SRGAP1Q7Z6B7 1085 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 GPBP1Q86WP2 473 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 RHPN2Q8IUC4 686 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 HACE1Q8IYU2 909 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 LRRC71Q8N4P6 559 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 LINC01465Q8N7H1 131 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 TMEM87AQ8NBN3 555 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 DEPTORQ8TB45 409 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 CCDC51Q96ER9 411 aa8.57□□□□□ -1.04
LIMCH1-222ENST00000515847 PRIMPOLQ96LW4 560 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms