RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LEO1Q8WVC0 666 aaPredicted RBP15.82■□□□□ 0.12
NUP54-216ENST00000514901 TMEM40Q8WWA1 233 aa15.82■□□□□ 0.12
NUP54-216ENST00000514901 RAD54LQ92698 747 aa15.82■□□□□ 0.12
NUP54-216ENST00000514901 IFT74Q96LB3 600 aa15.82■□□□□ 0.12
NUP54-216ENST00000514901 FDXACB1Q9BRP7 624 aaPredicted RBP15.82■□□□□ 0.12
NUP54-216ENST00000514901 NFKBIZQ9BYH8 718 aa15.82■□□□□ 0.12
NUP54-216ENST00000514901 POLR3FQ9H1D9 316 aaPredicted RBP15.82■□□□□ 0.12
NUP54-216ENST00000514901 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
NUP54-216ENST00000514901 PCDHA7Q9UN72 937 aa15.82■□□□□ 0.12
NUP54-216ENST00000514901 ENPP3O14638 875 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 GLRA2P23416 452 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 LAMA2P24043 3122 aaKnown RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 PTENP60484 403 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 WDR5P61964 334 aaKnown RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 SMAD3P84022 425 aaKnown RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 TCTN1Q2MV58 587 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 MAEAQ7L5Y9 396 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 IFNLR1Q8IU57 520 aaPredicted RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 ASAP3Q8TDY4 903 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 ZNF668Q96K58 619 aaPredicted RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 DRC1Q96MC2 740 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 PYM1Q9BRP8 204 aaKnown RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 TSPYL2Q9H2G4 693 aaPredicted RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 C17orf75Q9HAS0 396 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 IFT122Q9HBG6 1241 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 CHST12Q9NRB3 414 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 BLOC1S4Q9NUP1 217 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 FAM13BQ9NYF5 915 aa15.81■□□□□ 0.12
NUP54-216ENST00000514901 RBM19Q9Y4C8 960 aaKnown RBP15.81■□□□□ 0.12
NUP54-216ENST00000514901 ZSCAN20P17040 1043 aaPredicted RBP15.8■□□□□ 0.12
NUP54-216ENST00000514901 ADALQ6DHV7 355 aa15.8■□□□□ 0.12
NUP54-216ENST00000514901 LARP4BQ92615 738 aaKnown RBP15.8■□□□□ 0.12
NUP54-216ENST00000514901 C2orf40Q9H1Z8 148 aa15.8■□□□□ 0.12
NUP54-216ENST00000514901 GPRC5CQ9NQ84 441 aa15.8■□□□□ 0.12
NUP54-216ENST00000514901 C1orf112Q9NSG2 853 aa15.8■□□□□ 0.12
NUP54-216ENST00000514901 CHMP5Q9NZZ3 219 aa15.8■□□□□ 0.12
NUP54-216ENST00000514901 TCHHQ07283 1943 aa15.8■□□□□ 0.12
NUP54-216ENST00000514901 LAMA3Q16787 3333 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 MICAL3Q7RTP6 2002 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 DENND3A2RUS2 1198 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 STAT6P42226 847 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 NAMPTP43490 491 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 NCBP1Q09161 790 aaKnown RBP15.79■□□□□ 0.12
NUP54-216ENST00000514901 CAPSQ13938 189 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 MCM6Q14566 821 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 SHC4Q6S5L8 630 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 SV2BQ7L1I2 683 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 CATSPER4Q7RTX7 472 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 RUSC1Q9BVN2 902 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 TMX1Q9H3N1 280 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 CUEDC2Q9H467 287 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 RGS18Q9NS28 235 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 DACT1Q9NYF0 836 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 SIP14410 1827 aa15.79■□□□□ 0.12
NUP54-216ENST00000514901 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.78■□□□□ 0.12
NUP54-216ENST00000514901 LRRIQ4A6NIV6 560 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 HIP1RO75146 1068 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 CMA1P23946 247 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 DMP1Q13316 513 aaPredicted RBP15.78■□□□□ 0.12
NUP54-216ENST00000514901 DSC3Q14574 896 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 RAB30Q15771 203 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 RESP18Q5W5W9 173 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 GPR153Q6NV75 609 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.78■□□□□ 0.12
NUP54-216ENST00000514901 RTN4RL1Q86UN2 441 aaPredicted RBP15.78■□□□□ 0.12
NUP54-216ENST00000514901 GPBP1Q86WP2 473 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 HERC6Q8IVU3 1022 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 ZBTB8OSQ8IWT0 167 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 MYOCDQ8IZQ8 938 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 IQUBQ8NA54 791 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 DEPTORQ8TB45 409 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 TOP1MTQ969P6 601 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 ADAM2Q99965 735 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 PANK2Q9BZ23 570 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 LRRC27Q9C0I9 530 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 MSRAQ9UJ68 235 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 ODF2LQ9ULJ1 636 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 PCDHA11Q9Y5I1 949 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 TTC3P53804 2025 aa15.78■□□□□ 0.12
NUP54-216ENST00000514901 PHLPP2Q6ZVD8 1323 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 INO80B-WBP1J3KQ70 363 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 CSDE1O75534 798 aaKnown RBP15.77■□□□□ 0.12
NUP54-216ENST00000514901 GJB5O95377 273 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 KRT18P05783 430 aaKnown RBP15.77■□□□□ 0.12
NUP54-216ENST00000514901 STAG3L1P0CL83 205 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 AXLP30530 894 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 EFNA5P52803 228 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 DEFB103AP81534 67 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 DHX8Q14562 1220 aaKnown RBP15.77■□□□□ 0.12
NUP54-216ENST00000514901 NAALADL2Q58DX5 795 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 ARSHQ5FYA8 562 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 CDCA2Q69YH5 1023 aaPredicted RBP15.77■□□□□ 0.12
NUP54-216ENST00000514901 SLC24A5Q71RS6 500 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 LRRC15Q8TF66 581 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 IPO9Q96P70 1041 aaKnown RBP15.77■□□□□ 0.12
NUP54-216ENST00000514901 RAD9AQ99638 391 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 ZBED2Q9BTP6 218 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 TSHZ2Q9NRE2 1034 aa15.77■□□□□ 0.12
NUP54-216ENST00000514901 LARSQ9P2J5 1176 aaKnown RBP15.77■□□□□ 0.12
NUP54-216ENST00000514901 A0A1W2PQ27 194 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms