RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 FAM86B2P0C5J1 330 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 SP9P0CG40 484 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 TMOD1P28289 359 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 GPC3P51654 580 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 AP3B2Q13367 1082 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 EFCAB12Q6NXP0 572 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 PPP1R18Q6NYC8 613 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 NFXL1Q6ZNB6 911 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 TMTC2Q8N394 836 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 LRRC71Q8N4P6 559 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 CCDC82Q8N4S0 544 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 CMASQ8NFW8 434 aaPredicted RBP12.41□□□□□ -0.42
DDX41-216ENST00000513562 TRAIPQ9BWF2 469 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 EMILIN2Q9BXX0 1053 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 RWDD1Q9H446 243 aaPredicted RBP12.41□□□□□ -0.42
DDX41-216ENST00000513562 DLGAP2Q9P1A6 1054 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 IGLV3-22A0A075B6J6 115 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 SPDYE4A6NLX3 237 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 STK25O00506 426 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 PRC1O43663 620 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 SRFP11831 508 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 GSPT1P15170 499 aaKnown RBP12.4□□□□□ -0.42
DDX41-216ENST00000513562 FGFR4P22455 802 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 RFX1P22670 979 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 ZNF76P36508 570 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 PHKA2P46019 1235 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 NAPAP54920 295 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 NONOQ15233 471 aaKnown RBP eCLIP12.4□□□□□ -0.42
DDX41-216ENST00000513562 PHLDB3Q6NSJ2 640 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 ZNF746Q6NUN9 644 aaPredicted RBP12.4□□□□□ -0.42
DDX41-216ENST00000513562 SMAP1Q8IYB5 467 aaPredicted RBP12.4□□□□□ -0.42
DDX41-216ENST00000513562 DCLK2Q8N568 766 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 RUFY2Q8WXA3 655 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 RSAD2Q8WXG1 361 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 TMEM87BQ96K49 555 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 ZNF668Q96K58 619 aaPredicted RBP12.4□□□□□ -0.42
DDX41-216ENST00000513562 FAM167AQ96KS9 214 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 KLHL5Q96PQ7 755 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 RHOBTB2Q9BYZ6 727 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 NRDE2Q9H7Z3 1164 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 TBC1D13Q9NVG8 400 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 EPS15L1Q9UBC2 864 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 STK39Q9UEW8 545 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 CA14Q9ULX7 337 aa12.4□□□□□ -0.42
DDX41-216ENST00000513562 LILRB3O75022 631 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 DCNP07585 359 aaKnown RBP12.39□□□□□ -0.43
DDX41-216ENST00000513562 PSAPP07602 524 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 CNPP09543 421 aaKnown RBP12.39□□□□□ -0.43
DDX41-216ENST00000513562 KLRC2P26717 231 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 LIFRP42702 1097 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 CLK2P49760 499 aaKnown RBP12.39□□□□□ -0.43
DDX41-216ENST00000513562 ADCY7P51828 1080 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 AAMPQ13685 434 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 RSPO4Q2I0M5 234 aaPredicted RBP12.39□□□□□ -0.43
DDX41-216ENST00000513562 NOMO2Q5JPE7 1267 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 SPECC1Q5M775 1068 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 GLB1LQ6UWU2 654 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 TRMT1LQ7Z2T5 733 aaKnown RBP12.39□□□□□ -0.43
DDX41-216ENST00000513562 PLA2G4DQ86XP0 818 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 RAB11FIP4Q86YS3 637 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 C1orf210Q8IVY1 113 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 SLC44A3Q8N4M1 653 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 FANCBQ8NB91 859 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 SUMF1Q8NBK3 374 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 CRYGNQ8WXF5 182 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 STAMQ92783 540 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 NXPE3Q969Y0 559 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 WDR6Q9NNW5 1121 aaKnown RBP12.39□□□□□ -0.43
DDX41-216ENST00000513562 CHST12Q9NRB3 414 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 TBC1D22BQ9NU19 505 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 GABBR1Q9UBS5 961 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 PCDHA10Q9Y5I2 948 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 SLC12A7Q9Y666 1083 aa12.39□□□□□ -0.43
DDX41-216ENST00000513562 CLUHO75153 1309 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 CNTNAP5Q8WYK1 1306 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 B4GALT3O60512 393 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 IGHDP01880 384 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 OATP04181 439 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 CHMLP26374 656 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 GBP2P32456 591 aaPredicted RBP12.38□□□□□ -0.43
DDX41-216ENST00000513562 MCM5P33992 734 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 SLC11A1P49279 550 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 COL9A3Q14050 684 aaPredicted RBP12.38□□□□□ -0.43
DDX41-216ENST00000513562 CYP26C1Q6V0L0 522 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 GPR152Q8TDT2 470 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 NLRP7Q8WX94 980 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 MAP4K1Q92918 833 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 LPPQ93052 612 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 SCLT1Q96NL6 688 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 ZNF577Q9BSK1 485 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 MAN1C1Q9NR34 630 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 ARHGEF3Q9NR81 526 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 DNAJB4Q9UDY4 337 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 SIT1Q9Y3P8 196 aa12.38□□□□□ -0.43
DDX41-216ENST00000513562 SMCO2A6NFE2 343 aa12.37□□□□□ -0.43
DDX41-216ENST00000513562 MEIS3P2A8K0S8 358 aa12.37□□□□□ -0.43
DDX41-216ENST00000513562 hCG_1984214I3L0E3 225 aa12.37□□□□□ -0.43
DDX41-216ENST00000513562 SGSM2O43147 1006 aa12.37□□□□□ -0.43
DDX41-216ENST00000513562 ZNF862O60290 1169 aa12.37□□□□□ -0.43
DDX41-216ENST00000513562 KINO60870 393 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms