RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 CEP131Q9UPN4 1083 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 BAHCC1Q9P281 2608 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 MEIS1O00470 390 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 ZC3H11AO75152 810 aaKnown RBP eCLIP13.14□□□□□ -0.31
RNF4-216ENST00000511859 DDAH1O94760 285 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 GBP2P32456 591 aaPredicted RBP13.14□□□□□ -0.31
RNF4-216ENST00000511859 C1QBPQ07021 282 aaKnown RBP13.14□□□□□ -0.31
RNF4-216ENST00000511859 PTPN14Q15678 1187 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 ST3GAL2Q16842 350 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 SWSAP1Q6NVH7 229 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 MIS18BP1Q6P0N0 1132 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 CKAP2LQ8IYA6 745 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 FEZF2Q8TBJ5 459 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 RSAD2Q8WXG1 361 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 SECISBP2LQ93073 1101 aaKnown RBP13.14□□□□□ -0.31
RNF4-216ENST00000511859 KLHL5Q96PQ7 755 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 MAP7D2Q96T17 732 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 LNPKQ9C0E8 428 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 WDR6Q9NNW5 1121 aaKnown RBP13.14□□□□□ -0.31
RNF4-216ENST00000511859 CHST12Q9NRB3 414 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 NCDNQ9UBB6 729 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 DPP7Q9UHL4 492 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 AKT3Q9Y243 479 aa13.14□□□□□ -0.31
RNF4-216ENST00000511859 ATRXP46100 2492 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 SPTLC1O15269 473 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 N4BP1O75113 896 aaKnown RBP13.13□□□□□ -0.31
RNF4-216ENST00000511859 CCNE2O96020 404 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 FOSP01100 380 aaPredicted RBP13.13□□□□□ -0.31
RNF4-216ENST00000511859 GALTP07902 379 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 CYP21A2P08686 494 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 ATP4AP20648 1035 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 ELMSAN1Q6PJG2 1045 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 TMEM173Q86WV6 379 aaPredicted RBP13.13□□□□□ -0.31
RNF4-216ENST00000511859 PLEKHM2Q8IWE5 1019 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 ZNF654Q8IZM8 581 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 TMTC2Q8N394 836 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 SRBD1Q8N5C6 995 aaKnown RBP13.13□□□□□ -0.31
RNF4-216ENST00000511859 GPR152Q8TDT2 470 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 RTKNQ9BST9 563 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 TRAIPQ9BWF2 469 aa13.13□□□□□ -0.31
RNF4-216ENST00000511859 MAFBQ9Y5Q3 323 aaPredicted RBP13.13□□□□□ -0.31
RNF4-216ENST00000511859 MIA3Q5JRA6 1907 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 MTCL1Q9Y4B5 1905 aaKnown RBP13.12□□□□□ -0.31
RNF4-216ENST00000511859 CNOT1A5YKK6 2376 aaKnown RBP13.12□□□□□ -0.31
RNF4-216ENST00000511859 CNPP09543 421 aaKnown RBP13.12□□□□□ -0.31
RNF4-216ENST00000511859 SKIP12755 728 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 IRX6P78412 446 aaPredicted RBP13.12□□□□□ -0.31
RNF4-216ENST00000511859 EFCAB12Q6NXP0 572 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 NIPA1Q7RTP0 329 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 SHDQ96IW2 340 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 NRDE2Q9H7Z3 1164 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 ARHGEF3Q9NR81 526 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.12□□□□□ -0.311e-6■■□□□ 13.8
RNF4-216ENST00000511859 FBXO4Q9UKT5 387 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 USP24Q9UPU5 2620 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 WDR81Q562E7 1941 aa13.12□□□□□ -0.31
RNF4-216ENST00000511859 CCDC195A0A1B0GUA6 201 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 E7EWF7 191 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 LILRB3O75022 631 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 PLEKHA8P1O95397 391 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 DARSP14868 501 aaKnown RBP13.11□□□□□ -0.31
RNF4-216ENST00000511859 PHKA2P46019 1235 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 STARD6P59095 220 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 CDC42EP1Q00587 391 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 LMNB2Q03252 620 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 RNASELQ05823 741 aaKnown RBP13.11□□□□□ -0.31
RNF4-216ENST00000511859 DCLRE1AQ6PJP8 1040 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 GLB1LQ6UWU2 654 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 MAML2Q8IZL2 1156 aaPredicted RBP13.11□□□□□ -0.31
RNF4-216ENST00000511859 LINC01465Q8N7H1 131 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 PJA1Q8NG27 643 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 ATRIPQ8WXE1 791 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 MTA3Q9BTC8 594 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 SLC2A4RGQ9NR83 387 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 MRPL17Q9NRX2 175 aaKnown RBP13.11□□□□□ -0.31
RNF4-216ENST00000511859 CDV3Q9UKY7 258 aaKnown RBP13.11□□□□□ -0.31
RNF4-216ENST00000511859 SSX2IPQ9Y2D8 614 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 PCDHGA2Q9Y5H1 932 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 FAM208BQ5VWN6 2430 aa13.11□□□□□ -0.31
RNF4-216ENST00000511859 DDX39AO00148 427 aaKnown RBP13.1□□□□□ -0.31
RNF4-216ENST00000511859 DHX15O43143 795 aaKnown RBP13.1□□□□□ -0.31
RNF4-216ENST00000511859 ALDH2P05091 517 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 ADRB1P08588 477 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 CALM1P0DP23 149 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 CALM2P0DP24 149 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 CALM3P0DP25 149 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 GLULP15104 373 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 ZNF76P36508 570 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 CLCN3P51790 818 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 NOMO2Q5JPE7 1267 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 MYL10Q9BUA6 226 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 LY9Q9HBG7 655 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 TBC1D13Q9NVG8 400 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 CLUHO75153 1309 aa13.1□□□□□ -0.31
RNF4-216ENST00000511859 LAMTOR5O43504 91 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 LAMP2P13473 410 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 GPC3P51654 580 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 ANTXR2P58335 489 aa13.09□□□□□ -0.31
RNF4-216ENST00000511859 ZNF746Q6NUN9 644 aaPredicted RBP13.09□□□□□ -0.31
RNF4-216ENST00000511859 TRMT1LQ7Z2T5 733 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms