RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZNF830Q96NB3 372 aaPredicted RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 C1orf112Q9NSG2 853 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 GREB1LQ9C091 1923 aaPredicted RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 SFI1A8K8P3 1242 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 INO80B-WBP1J3KQ70 363 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 MAPK13O15264 365 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 PPFIA4O75335 1185 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 TNNI1P19237 187 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 GARTP22102 1010 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 NMT1P30419 496 aaKnown RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 MXI1P50539 228 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 MFAP3P55082 362 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 C10orf76Q5T2E6 689 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 NT5C1BQ96P26 610 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ERGIC2Q96RQ1 377 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 FAM207AQ9NSI2 230 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 ARGLU1Q9NWB6 273 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 BCCIPQ9P287 314 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP54-215ENST00000497106 MYO6Q9UM54 1294 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 MYCNP04198 464 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 MYBP10242 640 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 RBL2Q08999 1139 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 KLHL30Q0D2K2 578 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ACVR2BQ13705 512 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ABHD15Q6UXT9 468 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 KCNK18Q7Z418 384 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 KIAA0895Q8NCT3 520 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 MSTO1Q9BUK6 570 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 GCOM2Q9BZD3 368 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 PRMT7Q9NVM4 692 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 SUCLA2Q9P2R7 463 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 TLL2Q9Y6L7 1015 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ADAMTS3O15072 1205 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ATF7P17544 494 aaPredicted RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 CASP14P31944 242 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 USP8P40818 1118 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 FIGNQ5HY92 759 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 PLA2G4FQ68DD2 849 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 GPAT2Q6NUI2 795 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 RRAGAQ7L523 313 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 AFAP1L1Q8TED9 768 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 NLRP7Q8WX94 980 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ANKRD36BP1Q96IX9 119 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 HHIPL1Q96JK4 782 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 CEP83Q9Y592 693 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 FRMD3A2A2Y4 597 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 SLC10A3P09131 477 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 CYP2B6P20813 491 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 PSMC6P62333 389 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ENOSF1Q7L5Y1 443 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 SCFD1Q8WVM8 642 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 ERO1AQ96HE7 468 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 CALR3Q96L12 384 aaKnown RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 ST6GALNAC4Q9H4F1 302 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 TRMT1Q9NXH9 659 aaKnown RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 DDX41Q9UJV9 622 aaKnown RBP9.12□□□□□ -0.95
USP54-215ENST00000497106 TBX20Q9UMR3 447 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 MYH15Q9Y2K3 1946 aa9.12□□□□□ -0.95
USP54-215ENST00000497106 SOWAHBA6NEL2 793 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 FARP2O94887 1054 aaPredicted RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 RARBP10826 455 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 HARSP12081 509 aaKnown RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 AKR1A1P14550 325 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 CETN2P41208 172 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 DEFB115Q30KQ5 88 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 ODF2Q5BJF6 829 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 GCNT4Q9P109 453 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 MYO1AQ9UBC5 1043 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 SCN4AP35499 1836 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 TCHHQ07283 1943 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 EMSYQ7Z589 1322 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 TOMM70O94826 608 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 TNFAIP3P21580 790 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 EDNRBP24530 442 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 VAMP7P51809 220 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 KCNH2Q12809 1159 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 C7orf31Q8N865 590 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 ANKFY1Q9P2R3 1169 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 CLDN3O15551 220 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 TMEM191BP0C7N4 346 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 GTF2H1P32780 548 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 ZNF131P52739 623 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 ADKP55263 362 aaKnown RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 SNX16P57768 344 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 CCDC181Q5TID7 509 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 IFNL1Q8IU54 200 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 RAET1EQ8TD07 263 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 C16orf45Q96MC5 204 aaPredicted RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 HAUS4Q9H6D7 363 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 AGPAT3Q9NRZ7 376 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 HSPBP1Q9NZL4 362 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 CAPN11Q9UMQ6 739 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 LRRC10BA6NIK2 292 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 GNRH1P01148 92 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 SERPING1P05155 500 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 PRKCBP05771 671 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 POLR2FP61218 127 aaKnown RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 GNG11P61952 73 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 CKAP4Q07065 602 aaKnown RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 PCBP1Q15365 356 aaKnown RBP eCLIP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms