RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CYP1B1Q16678 543 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 KNOP1Q1ED39 458 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 BMT2Q1RMZ1 405 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 C11orf63Q6NUN7 778 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 INTS5Q6P9B9 1019 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 BARGINQ6ZT62 677 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 EPM2AIP1Q7L775 607 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 EXOC3L1Q86VI1 746 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 NEDD1Q8NHV4 660 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 LNX1Q8TBB1 728 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 EPS8L3Q8TE67 593 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 SH3TC2Q8TF17 1288 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 CKAP2Q8WWK9 683 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 HAS1Q92839 578 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 PIGSQ96S52 555 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 KANSL2Q9H9L4 492 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 ERVK-5Q9HDB9 667 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 CCDC87Q9NVE4 849 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 USP40Q9NVE5 1235 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 NIP7Q9Y221 180 aaKnown RBP eCLIP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 SNX24Q9Y343 169 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 LRRC42Q9Y546 428 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 NHSQ6T4R5 1651 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 PFASO15067 1338 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 UNC5CO95185 931 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 RPL13P26373 211 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 SOX5P35711 763 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 RPL21P46778 160 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 IFNAR2P48551 515 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 CLK2P49760 499 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 MAP2K1Q02750 393 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 PTPROQ16827 1216 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 NBPF20Q3BBV1 942 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 CHADLQ6NUI6 762 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 GPBP1Q86WP2 473 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 DZIP1Q86YF9 867 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 RHOT2Q8IXI1 618 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 DYDC1Q8WWB3 177 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 GLG1Q92896 1179 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 ART4Q93070 314 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 NAF1Q96HR8 494 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 OSGEPQ9NPF4 335 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 TXLNGQ9NUQ3 528 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 FGFR1OP2Q9NVK5 253 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 ANKIB1Q9P2G1 1089 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 DDX25Q9UHL0 483 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 PCDHA12Q9UN75 941 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 RPL26L1Q9UNX3 145 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 CD2APQ9Y5K6 639 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 ANKRD62A6NC57 917 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 TCP11X1B4DZS4 312 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 EVI5O60447 810 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 TCEA3O75764 348 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 LINGO3P0C6S8 592 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 GNAZP19086 355 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 SLC12A3P55017 1021 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 EVA1CP58658 441 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 MRPS35P82673 323 aaKnown RBP10.44□□□□□ -0.74
SYNE1-230ENST00000495090 NFIL3Q16649 462 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 USP17L2Q6R6M4 530 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 SPICE1Q8N0Z3 855 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 UBL4BQ8N7F7 174 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 MORC4Q8TE76 937 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 FBF1Q8TES7 1133 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 PRCCQ92733 491 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-230ENST00000495090 SLC35C1Q96A29 364 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 TMEM237Q96Q45 408 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 STK33Q9BYT3 514 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 TYW1Q9NV66 732 aaKnown RBP10.44□□□□□ -0.74
SYNE1-230ENST00000495090 TBC1D7Q9P0N9 293 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 GCNT4Q9P109 453 aa10.44□□□□□ -0.74
SYNE1-230ENST00000495090 SPATA31A1Q5TZJ5 1347 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 DDX60LQ5H9U9 1706 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 TMEM120BA0PK00 339 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 HIP1RO75146 1068 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 SNUPNO95149 360 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 EYA4O95677 639 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 BAG3O95817 575 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 TTLL1O95922 423 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 NEFHP12036 1026 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 PECAM1P16284 738 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ABL2P42684 1182 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 GSTO1P78417 241 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 PRPF4BQ13523 1007 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 LBRQ14739 615 aaKnown RBP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 TAF11Q15544 211 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 SGSM1Q2NKQ1 1148 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ASPRV1Q53RT3 343 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 SPDYAQ5MJ70 313 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 NUGGCQ68CJ6 796 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 VSTM1Q6UX27 236 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 C16orf86Q6ZW13 317 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 DNAAF5Q86Y56 855 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 AGGF1Q8N302 714 aaeCLIP10.43□□□□□ -0.74
SYNE1-230ENST00000495090 FITM2Q8N6M3 262 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 PRELID2Q8N945 189 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 RPS6KC1Q96S38 1066 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 EYA3Q99504 573 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 ANKRD2Q9GZV1 360 aa10.43□□□□□ -0.74
SYNE1-230ENST00000495090 LRMDAQ9H2I8 198 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms