RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FEM1BQ9UK73 627 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RBAK-RBAKDNI3L0D1 243 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SPOPO43791 374 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 VCAM1P19320 739 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PRPHP41219 470 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ERVK-24P63145 666 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZBED6P86452 979 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 INTS8Q75QN2 995 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 VSIG1Q86XK7 387 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GBP5Q96PP8 586 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EPB41L5Q9HCM4 733 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MEIS2O14770 477 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 AFPP02771 609 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TCP1P17987 556 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SARSP49591 514 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 USP11P51784 963 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SETDB1Q15047 1291 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KIAA1755Q5JYT7 1200 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SLC30A9Q6PML9 568 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RNF168Q8IYW5 571 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ABCC6O95255 1503 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GSTTP1A0A1W2PQM5 241 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FGRP09769 529 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CD58P19256 250 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SLMAPQ14BN4 828 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KNOP1Q1ED39 458 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EPC2Q52LR7 807 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 EMBQ6PCB8 327 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 THNSL1Q8IYQ7 743 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZNF280CQ8ND82 737 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TRPM4Q8TD43 1214 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 CCT8L2Q96SF2 557 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MMTAG2Q9BU76 263 aaKnown RBP11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ANKZF1Q9H8Y5 726 aa11.6□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ESYT3A0FGR9 886 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NKRFO15226 690 aaKnown RBP eCLIP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PLCB3Q01970 1234 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KCTD2Q14681 263 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MUM1Q2TAK8 710 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 C2CD6Q53TS8 623 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SCARA5Q6ZMJ2 495 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 KLHL29Q96CT2 875 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ONECUT3O60422 494 aaPredicted RBP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PFDN1O60925 122 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RPS6KA5O75582 802 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PPP1R37O75864 691 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TTI2Q6NXR4 508 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NFRKBQ6P4R8 1299 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PEX26Q7Z412 305 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 GUF1Q8N442 669 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 RNF169Q8NCN4 708 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MSANTD4Q8NCY6 345 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ZNF473Q8WTR7 871 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 IDI2Q9BXS1 227 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 UNC45AQ9H3U1 944 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 TMX2Q9Y320 296 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 DENND3A2RUS2 1198 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 HEXIM1O94992 359 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 ATP1A1P05023 1023 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 NR3C2P08235 984 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 PPP1R2P41236 205 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 SEC24CP53992 1094 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 HVCN1Q96D96 273 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 FAM20AQ96MK3 541 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 IMPG2Q9BZV3 1241 aa11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 STMN4Q9H169 189 aaPredicted RBP11.59□□□□□ -0.55
MSH5-SAPCD1-207ENST00000493662 MYH13Q9UKX3 1938 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CTNND1O60716 968 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CNGA1P29973 690 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MYL7Q01449 175 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PDIA5Q14554 519 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SPDYE2Q495Y8 402 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EGFL6Q8IUX8 553 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PASD1Q8IV76 773 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SGSM3Q96HU1 749 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 C7orf25Q9BPX7 421 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FAM213AQ9BRX8 229 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 AP1M1Q9BXS5 423 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LACRTQ9GZZ8 138 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 STIM2Q9P246 746 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PCDHA13Q9Y5I0 950 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EPHB6O15197 1021 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ZNF18P17022 549 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PSMC2P35998 433 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MESDQ14696 234 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CEP128Q6ZU80 1094 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DPP9Q86TI2 863 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CCDC13Q8IYE1 715 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CAMKK2Q96RR4 588 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FAM49AQ9H0Q0 323 aaPredicted RBP11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EHD4Q9H223 541 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PVALEFA0A1B0GWK0 134 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 QARSP47897 775 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ACOT2P49753 483 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CNTN2Q02246 1040 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LRRC63Q05C16 580 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 OTUD6AQ7L8S5 288 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SESTD1Q86VW0 696 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GLYCTKQ8IVS8 523 aa11.58□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 C4orf32Q8N8J7 132 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms