RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 DAGLBQ8NCG7 672 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 SH3RF3Q8TEJ3 882 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 KIFAP3Q92845 792 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 RBM41Q96IZ5 413 aaKnown RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TMEM109Q9BVC6 243 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 KIAA1683Q9H0B3 1180 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 BZW2Q9Y6E2 419 aaKnown RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TRPM3Q9HCF6 1732 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 ABLIM1O14639 778 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 STX2P32856 288 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 SKIV2L2P42285 1042 aaKnown RBP12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TFAP4Q01664 338 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TSNAXIP1Q2TAA8 658 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TTC27Q6P3X3 843 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.61□□□□□ -0.392e-6■■■■■ 171.9
HDAC4-210ENST00000493582 DNAJC19Q96DA6 116 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TBC1D10AQ9BXI6 508 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TMEM260Q9NX78 707 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 TBK1Q9UHD2 729 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 IGSF9BQ9UPX0 1349 aa12.61□□□□□ -0.39
HDAC4-210ENST00000493582 NPHP3-ACAD11A0A0J9YXS1 232 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 BRAFP15056 766 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 ACADSP16219 412 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 PON1P27169 355 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 DRG2P55039 364 aaKnown RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 DHX34Q14147 1143 aaKnown RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 INTS8Q75QN2 995 aaKnown RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 ZDHHC14Q8IZN3 488 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 FGD4Q96M96 766 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 CEP63Q96MT8 703 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 UBE2OQ9C0C9 1292 aaKnown RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 DENND2DQ9H6A0 471 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 TXLNGQ9NUQ3 528 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 RASAL2Q9UJF2 1139 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 RPS6KL1Q9Y6S9 549 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 GFPT2O94808 682 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 PYGBP11216 843 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 RARGP13631 454 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 RASA1P20936 1047 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 CALCRLQ16602 461 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 EXOC3L4Q17RC7 722 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 PARP6Q2NL67 630 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 RNF43Q68DV7 783 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 MFSD5Q6N075 450 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 CROCCP2Q86T23 111 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 TRIM74Q86UV6 250 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 TRIM73Q86UV7 250 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 CCNJLQ8IV13 435 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 GLYCTKQ8IVS8 523 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 MARCH10Q8NA82 808 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 FAM136AQ96C01 138 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 PITPNM3Q9BZ71 974 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 LRMDAQ9H2I8 198 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 ZHX3Q9H4I2 956 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 VAT1LQ9HCJ6 419 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 DNAJC17Q9NVM6 304 aaKnown RBP12.6□□□□□ -0.39
HDAC4-210ENST00000493582 HDAC9Q9UKV0 1011 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 MYH3P11055 1940 aa12.6□□□□□ -0.39
HDAC4-210ENST00000493582 DOCK2Q92608 1830 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 USP17L3A6NCW0 530 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 USP17L4A6NCW7 530 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 ERVV-2B6SEH9 535 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 E7ENQ6 273 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 SLC37A4O43826 429 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 GNA14O95837 355 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 PCP11498 1178 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 RCN2Q14257 317 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 LLGL1Q15334 1064 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 GALNT17Q6IS24 598 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 USP17L1Q7RTZ2 530 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 KRT25Q7Z3Z0 450 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 PRELID2Q8N945 189 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 RBBP8NLQ8NC74 664 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 ZCRB1Q8TBF4 217 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 FAM81AQ8TBF8 368 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 PAIP2Q9BPZ3 127 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 TMX4Q9H1E5 349 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 VCXQ9H320 206 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 DCP1AQ9NPI6 582 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 NMRK1Q9NWW6 199 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 A0A0A6YYK5 440 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 CBX6O95503 412 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 FOXN2P32314 431 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 KCNJ1P48048 391 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 DCAF17Q5H9S7 520 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 TCERG1LQ5VWI1 586 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 VPS36Q86VN1 386 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 NAP1L3Q99457 506 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 POP1Q99575 1024 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 CARD9Q9H257 536 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 OCEL1Q9H607 264 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 METTL5Q9NRN9 209 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 NENFQ9UMX5 172 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 CHKBQ9Y259 395 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 KCPQ6ZWJ8 1503 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 PCDH11XQ9BZA7 1347 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 NVLO15381 856 aaKnown RBP12.59□□□□□ -0.39
HDAC4-210ENST00000493582 TDP2O95551 362 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 NR2F2P24468 414 aa12.59□□□□□ -0.39
HDAC4-210ENST00000493582 MTFR1Q15390 333 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms