RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 ZSWIM6Q9HCJ5 1215 aa10.28□□□□□ -0.76
HDAC3-212ENST00000492407 MUTYHQ9UIF7 546 aa10.28□□□□□ -0.76
HDAC3-212ENST00000492407 BARX2Q9UMQ3 279 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-212ENST00000492407 M0R2N6 131 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 PER2O15055 1255 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 ADAMTS3O15072 1205 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 ZNF623O75123 536 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 CPA1P15085 419 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 SFPQP23246 707 aaKnown RBP eCLIP10.27□□□□□ -0.77
HDAC3-212ENST00000492407 RAB27AP51159 221 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 POLGP54098 1239 aaPredicted RBP10.27□□□□□ -0.77
HDAC3-212ENST00000492407 ITIH3Q06033 890 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 SIGLEC14Q08ET2 396 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 SMC1AQ14683 1233 aaKnown RBP10.27□□□□□ -0.77
HDAC3-212ENST00000492407 MIER3Q7Z3K6 550 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 TMC7Q7Z402 723 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 SLC39A11Q8N1S5 342 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 MRPL43Q8N983 215 aaKnown RBP10.27□□□□□ -0.77
HDAC3-212ENST00000492407 TBCKQ8TEA7 893 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 NLRP7Q8WX94 980 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 FBXL18Q96ME1 805 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 FAM20AQ96MK3 541 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 CEP89Q96ST8 783 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 NAP1L4Q99733 375 aaKnown RBP10.27□□□□□ -0.77
HDAC3-212ENST00000492407 TCF25Q9BQ70 676 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 IRF2BPLQ9H1B7 796 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 UNC45AQ9H3U1 944 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 RNF19AQ9NV58 838 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 VPS54Q9P1Q0 977 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 IRAK3Q9Y616 596 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 CYP46A1Q9Y6A2 500 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 PIEZO1Q92508 2521 aa10.27□□□□□ -0.77
HDAC3-212ENST00000492407 TMEM221A6NGB7 291 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 M0R296 226 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 CPLX1O14810 134 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 TBX3O15119 743 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 MAFO75444 373 aaPredicted RBP10.26□□□□□ -0.77
HDAC3-212ENST00000492407 STBD1O95210 358 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 ALDH7A1P49419 539 aaKnown RBP10.26□□□□□ -0.77
HDAC3-212ENST00000492407 PSMC5P62195 406 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 NHLH1Q02575 133 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 NONOQ15233 471 aaKnown RBP eCLIP10.26□□□□□ -0.77
HDAC3-212ENST00000492407 PCBP1Q15365 356 aaKnown RBP eCLIP10.26□□□□□ -0.77
HDAC3-212ENST00000492407 PPP4R3AQ6IN85 833 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 KRT25Q7Z3Z0 450 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 BLIDQ8IZY5 108 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 LRRC71Q8N4P6 559 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 VN1R2Q8NFZ6 395 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 ETNPPLQ8TBG4 499 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 PBXIP1Q96AQ6 731 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 SCLT1Q96NL6 688 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 ADAM7Q9H2U9 754 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 ENTPD7Q9NQZ7 604 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 TSHZ2Q9NRE2 1034 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 NR2E1Q9Y466 385 aa10.26□□□□□ -0.77
HDAC3-212ENST00000492407 C2orf71A6NGG8 1288 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 GAS2O43903 313 aaKnown RBP10.25□□□□□ -0.77
HDAC3-212ENST00000492407 CDKL5O76039 1030 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 GCFC2P16383 781 aaKnown RBP10.25□□□□□ -0.77
HDAC3-212ENST00000492407 TECP42680 631 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PHKA2P46019 1235 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PTPN5P54829 565 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PPP2R5CQ13362 524 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 TOB2Q14106 344 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-212ENST00000492407 UGCGQ16739 394 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PTPN21Q16825 1174 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 CLLU1OSQ5K130 101 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PLPP4Q5VZY2 271 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 CES5AQ6NT32 575 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 SYCE2Q6PIF2 218 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 TRMT1LQ7Z2T5 733 aaKnown RBP10.25□□□□□ -0.77
HDAC3-212ENST00000492407 SUGP1Q8IWZ8 645 aaKnown RBP10.25□□□□□ -0.77
HDAC3-212ENST00000492407 FBXL6Q8N531 539 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PGBD4Q96DM1 585 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 TMEM169Q96HH4 297 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PPP1R16BQ96T49 567 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 DZANK1Q9NVP4 752 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 SUCLA2Q9P2R7 463 aaPredicted RBP10.25□□□□□ -0.77
HDAC3-212ENST00000492407 PCDHGC5Q9Y5F6 944 aa10.25□□□□□ -0.77
HDAC3-212ENST00000492407 DDX11L8A8MPP1 907 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 HIDE1A8MVS5 230 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 ASAP2O43150 1006 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 CHMP2AO43633 222 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 CSPG5O95196 566 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 P4HBP07237 508 aaKnown RBP10.24□□□□□ -0.77
HDAC3-212ENST00000492407 XBP1P17861 261 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 IBSPP21815 317 aaPredicted RBP10.24□□□□□ -0.77
HDAC3-212ENST00000492407 RFC5P40937 340 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 MTHFRP42898 656 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 QARSP47897 775 aaKnown RBP10.24□□□□□ -0.77
HDAC3-212ENST00000492407 BCAR1P56945 870 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 CCT2P78371 535 aaKnown RBP10.24□□□□□ -0.77
HDAC3-212ENST00000492407 MTERF2Q49AM1 385 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 GLB1LQ6UWU2 654 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 SRGAP1Q7Z6B7 1085 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 DDX53Q86TM3 631 aaKnown RBP10.24□□□□□ -0.77
HDAC3-212ENST00000492407 ALYREFQ86V81 257 aaKnown RBP10.24□□□□□ -0.77
HDAC3-212ENST00000492407 PPFIBP1Q86W92 1011 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 SKAP1Q86WV1 359 aa10.24□□□□□ -0.77
HDAC3-212ENST00000492407 UBALD2Q8IYN6 164 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms