RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 WDR26Q9H7D7 661 aa6.48□□□□□ -1.37
SCN1A-206ENST00000491429 ZNHIT2Q9UHR6 403 aa6.48□□□□□ -1.37
SCN1A-206ENST00000491429 DNAI1Q9UI46 699 aa6.48□□□□□ -1.37
SCN1A-206ENST00000491429 TCRBV16S1A1N1A0A5B0 115 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 MFAP3LO75121 409 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 STC2O76061 302 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 ABHD16AO95870 558 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 ITGB1P05556 798 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 HNRNPLP14866 589 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-206ENST00000491429 PTPAQ15257 358 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 LONRF2Q1L5Z9 754 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 TRIM61Q5EBN2 209 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 LY6G5CQ5SRR4 150 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 SLFN12LQ6IEE8 588 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 MFSD5Q6N075 450 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 LRRC55Q6ZSA7 311 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 FGD2Q7Z6J4 655 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 PRIMA1Q86XR5 153 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 ARL8AQ96BM9 186 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 DYDC2Q96IM9 177 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 MAML3Q96JK9 1138 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 WDR92Q96MX6 357 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 BOCQ9BWV1 1114 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 POLR3BQ9NW08 1133 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-206ENST00000491429 KCMF1Q9P0J7 381 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 PTGFRNQ9P2B2 879 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 NCDNQ9UBB6 729 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 HS3ST4Q9Y661 456 aa6.47□□□□□ -1.37
SCN1A-206ENST00000491429 DVL2O14641 736 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 APPP05067 770 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 ZFP36P26651 326 aaKnown RBP6.46□□□□□ -1.38
SCN1A-206ENST00000491429 FNTBP49356 437 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 LRCH2Q5VUJ6 765 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 KCNV1Q6PIU1 500 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 OTOP1Q7RTM1 612 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 BRAPQ7Z569 592 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 CXorf67Q86X51 503 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-206ENST00000491429 THAP3Q8WTV1 239 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-206ENST00000491429 E2F7Q96AV8 911 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 SFMBT1Q9UHJ3 866 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 SORCS3Q9UPU3 1222 aa6.46□□□□□ -1.38
SCN1A-206ENST00000491429 MASP2O00187 686 aa6.45□□□□□ -1.38
SCN1A-206ENST00000491429 IPO13O94829 963 aaKnown RBP6.45□□□□□ -1.38
SCN1A-206ENST00000491429 JUNP05412 331 aaKnown RBP6.45□□□□□ -1.38
SCN1A-206ENST00000491429 KIF11P52732 1056 aa6.45□□□□□ -1.38
SCN1A-206ENST00000491429 PTTG1IPP53801 180 aa6.45□□□□□ -1.38
SCN1A-206ENST00000491429 NAIF1Q69YI7 327 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-206ENST00000491429 CPT1CQ8TCG5 803 aa6.45□□□□□ -1.38
SCN1A-206ENST00000491429 ST8SIA2Q92186 375 aa6.45□□□□□ -1.38
SCN1A-206ENST00000491429 UBA6A0AVT1 1052 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-206ENST00000491429 HK1P19367 917 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 SPIDRQ14159 915 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 CSRP2Q16527 193 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 FAM214AQ32MH5 1076 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 HECTD2Q5U5R9 776 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 PRAMEF9Q5VWM5 478 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 CMTM4Q8IZR5 234 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 BEND2Q8NDZ0 799 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 BBC3Q96PG8 261 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-206ENST00000491429 HAPLN2Q9GZV7 340 aa6.44□□□□□ -1.38
SCN1A-206ENST00000491429 COL4A3Q01955 1670 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 ZAR1LA6NP61 321 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 B3GALT2O43825 422 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 NPTXRO95502 500 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 MECP2P51608 486 aaKnown RBP6.43□□□□□ -1.38
SCN1A-206ENST00000491429 NPEPPSP55786 919 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 TTC38Q5R3I4 469 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 BMP8AQ7Z5Y6 402 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 NAF1Q96HR8 494 aaKnown RBP6.43□□□□□ -1.38
SCN1A-206ENST00000491429 ZNF768Q9H5H4 540 aaKnown RBP6.43□□□□□ -1.38
SCN1A-206ENST00000491429 C14orf93Q9H972 538 aaKnown RBP6.43□□□□□ -1.38
SCN1A-206ENST00000491429 SYNPO2LQ9H987 977 aa6.43□□□□□ -1.38
SCN1A-206ENST00000491429 FAM221BA6H8Z2 402 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 E9PSI1 815 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 DAPK3O43293 454 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 SCAF4O95104 1147 aaKnown RBP6.42□□□□□ -1.38
SCN1A-206ENST00000491429 GNAT2P19087 354 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 KIR2DL3P43628 341 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 C21orf58P58505 322 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 MYBPC3Q14896 1274 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 ZC3H12BQ5HYM0 836 aaKnown RBP6.42□□□□□ -1.38
SCN1A-206ENST00000491429 OLFML1Q6UWY5 402 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 ADGRG3Q86Y34 549 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 TUBGCP5Q96RT8 1024 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 IGSF5Q9NSI5 407 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 SIRPGQ9P1W8 387 aa6.42□□□□□ -1.38
SCN1A-206ENST00000491429 PPP1R1BQ9UD71 204 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-206ENST00000491429 M0R2C6 588 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 RASA3Q14644 834 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 TIGD2Q4W5G0 525 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 PLEKHG4Q58EX7 1191 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 DCAF17Q5H9S7 520 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-206ENST00000491429 NBPF6Q5VWK0 638 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 APBB1IPQ7Z5R6 666 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-206ENST00000491429 C16orf92Q96LL3 132 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 NBPF4Q96M43 638 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 TOR3AQ9H497 397 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 TRIM39Q9HCM9 518 aa6.41□□□□□ -1.38
SCN1A-206ENST00000491429 CENPVL1A0A0U1RR11 272 aa6.4□□□□□ -1.38
SCN1A-206ENST00000491429 KIAA0355O15063 1070 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms