RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SLC39A11Q8N1S5 342 aa13.96□□□□□ -0.17
CPSF3-204ENST00000489403 HELQQ8TDG4 1101 aa13.96□□□□□ -0.17
CPSF3-204ENST00000489403 SH2D3AQ9BRG2 576 aa13.96□□□□□ -0.17
CPSF3-204ENST00000489403 APOL5Q9BWW9 433 aa13.96□□□□□ -0.17
CPSF3-204ENST00000489403 NIFKQ9BYG3 293 aaKnown RBP13.96□□□□□ -0.17
CPSF3-204ENST00000489403 C22orf23Q9BZE7 217 aa13.96□□□□□ -0.17
CPSF3-204ENST00000489403 SPG21Q9NZD8 308 aa13.96□□□□□ -0.17
CPSF3-204ENST00000489403 KMT2EQ8IZD2 1858 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 CYP3A7-CYP3A51PA0A087WV96 503 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 A0A087WZ62 844 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 IGKV6-21A0A0C4DH24 114 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 EOMESO95936 686 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 CYP3A7P24462 503 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 MRE11P49959 708 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 XKR3Q5GH77 459 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 BLIDQ8IZY5 108 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 DAGLBQ8NCG7 672 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 ETNPPLQ8TBG4 499 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 MBOAT7Q96N66 472 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 FDXACB1Q9BRP7 624 aaPredicted RBP13.95□□□□□ -0.18
CPSF3-204ENST00000489403 GCOM2Q9BZD3 368 aaPredicted RBP13.95□□□□□ -0.18
CPSF3-204ENST00000489403 ZSWIM6Q9HCJ5 1215 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 DACT1Q9NYF0 836 aa13.95□□□□□ -0.18
CPSF3-204ENST00000489403 C2orf71A6NGG8 1288 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 NT5C1B-RDH14C9J2C7 533 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 DEXIO95424 95 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 BCAR1P56945 870 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 SMC1AQ14683 1233 aaKnown RBP13.94□□□□□ -0.18
CPSF3-204ENST00000489403 MOXD1Q6UVY6 613 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 PRSS33Q8NF86 280 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 PBXIP1Q96AQ6 731 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 AIFM3Q96NN9 605 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 LARP6Q9BRS8 491 aaKnown RBP13.94□□□□□ -0.18
CPSF3-204ENST00000489403 MRPL9Q9BYD2 267 aaKnown RBP13.94□□□□□ -0.18
CPSF3-204ENST00000489403 CHST12Q9NRB3 414 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 CDH22Q9UJ99 828 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 HCFC2Q9Y5Z7 792 aa13.94□□□□□ -0.18
CPSF3-204ENST00000489403 SLC37A4O43826 429 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 HOXB8P17481 243 aaPredicted RBP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 SFPQP23246 707 aaKnown RBP eCLIP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 SP100P23497 879 aaPredicted RBP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 PHKA2P46019 1235 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 SIGLEC14Q08ET2 396 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 NONOQ15233 471 aaKnown RBP eCLIP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 PTPN21Q16825 1174 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 IER5LQ5T953 404 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 PLA2G4FQ68DD2 849 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 ANO5Q75V66 913 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 ZNF410Q86VK4 478 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 MRPL43Q8N983 215 aaKnown RBP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 CASP10Q92851 521 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 LPPQ93052 612 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 ASIC4Q96FT7 647 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 ZNF274Q96GC6 653 aaPredicted RBP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 TRAIPQ9BWF2 469 aa13.93□□□□□ -0.18
CPSF3-204ENST00000489403 DDX25Q9UHL0 483 aaKnown RBP13.93□□□□□ -0.18
CPSF3-204ENST00000489403 MEIS3P2A8K0S8 358 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 EML1O00423 815 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 CPLX1O14810 134 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 EPB41L2O43491 1005 aaKnown RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 CLASP2O75122 1294 aaKnown RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 ZC3H11AO75152 810 aaKnown RBP eCLIP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 MAFO75444 373 aaPredicted RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 CA8P35219 290 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 ALDH7A1P49419 539 aaKnown RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 DNM2P50570 870 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 CDC42EP1Q00587 391 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 STK3Q13188 491 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 INF2Q27J81 1249 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 LONRF3Q496Y0 759 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 TWF2Q6IBS0 349 aaKnown RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 TMEM173Q86WV6 379 aaPredicted RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 RHPN2Q8IUC4 686 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 KSR1Q8IVT5 923 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 SUGP1Q8IWZ8 645 aaKnown RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 TMEM169Q96HH4 297 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 NLRP4Q96MN2 994 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 INO80BQ9C086 356 aaPredicted RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 ZBP1Q9H171 429 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 POMKQ9H5K3 350 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 SUCLA2Q9P2R7 463 aaPredicted RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 PIN4Q9Y237 131 aaKnown RBP13.92□□□□□ -0.18
CPSF3-204ENST00000489403 CYP46A1Q9Y6A2 500 aa13.92□□□□□ -0.18
CPSF3-204ENST00000489403 DDX11L8A8MPP1 907 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 PSMC5P62195 406 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 LETM2Q2VYF4 491 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 TPRNQ4KMQ1 711 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 GALNT17Q6IS24 598 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 KRT25Q7Z3Z0 450 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 FAM177A1Q8N128 213 aaPredicted RBP13.91□□□□□ -0.18
CPSF3-204ENST00000489403 FBXL6Q8N531 539 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 BCL7CQ8WUZ0 217 aaPredicted RBP13.91□□□□□ -0.18
CPSF3-204ENST00000489403 RSPH1Q8WYR4 309 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 PHOX2BQ99453 314 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 TM6SF1Q9BZW5 370 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 NRDE2Q9H7Z3 1164 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 FAM105AQ9NUU6 356 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 VAV3Q9UKW4 847 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 KCNJ14Q9UNX9 436 aa13.91□□□□□ -0.18
CPSF3-204ENST00000489403 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms