RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, human

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-C-208	ENST00000487245	MAPK7	Q13164	816 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	FOXR1	Q6PIV2	292 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	H2AFV	Q71UI9	128 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	TMEM174	Q8WUU8	243 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	CASKIN2	Q8WXE0	1202 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	TEPSIN	Q96N21	525 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	TMEM206	Q9H813	350 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	AJAP1	Q9UKB5	411 aa	Predicted RBP	28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	NFU1	Q9UMS0	254 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	PACSIN2	Q9UNF0	486 aa	Predicted RBP	28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	STXBP5L	Q9Y2K9	1186 aa		28.4	■■■□□ 2.14
HLA-C-208	ENST00000487245	SLC20A2	Q08357	652 aa		28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	SYCP3	Q8IZU3	236 aa		28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	SYTL5	Q8TDW5	730 aa	Predicted RBP	28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	ZIM3	Q96PE6	472 aa		28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	STK33	Q9BYT3	514 aa		28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	FEZ2	Q9UHY8	353 aa	Predicted RBP	28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	CTDP1	Q9Y5B0	961 aa	Predicted RBP	28.39	■■■□□ 2.14
HLA-C-208	ENST00000487245	CCDC172	P0C7W6	258 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	IRAK1	P51617	712 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	TAOK3	Q9H2K8	898 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	SUCLA2	Q9P2R7	463 aa	Predicted RBP	28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	DDX39A	O00148	427 aa	Known RBP	28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	KCNK3	O14649	394 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	ZBED4	O75132	1171 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	QARS	P47897	775 aa	Known RBP	28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	EMC10	Q5UCC4	262 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	SYCE1	Q8N0S2	351 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	SLC30A5	Q8TAD4	765 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	PPP1R9A	Q9ULJ8	1098 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	MYH11	P35749	1972 aa		28.38	■■■□□ 2.13
HLA-C-208	ENST00000487245	DDX3X	O00571	662 aa	Known RBP eCLIP	28.37	■■■□□ 2.13	3e-9	■■□□□ 12.3
HLA-C-208	ENST00000487245	RAD51C	O43502	376 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	CYP2J2	P51589	502 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	COG2	Q14746	738 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	TTMP	Q5BVD1	217 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	CFAP58	Q5T655	872 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	CPXCR1	Q8N123	301 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	DAW1	Q8N136	415 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	RASGEF1C	Q8N431	466 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	OLIG1	Q8TAK6	271 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	CAPS2	Q9BXY5	557 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	ISCU	Q9H1K1	167 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	RAVER2	Q9HCJ3	691 aa	Known RBP	28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	LCMT1	Q9UIC8	334 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	NCAN	O14594	1321 aa		28.37	■■■□□ 2.13
HLA-C-208	ENST00000487245	RFX1	P22670	979 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	NOP2	P46087	812 aa	Known RBP	28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	SNRPF	P62306	86 aa	Known RBP	28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	MTMR1	Q13613	665 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	DALRD3	Q5D0E6	543 aa	Known RBP	28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	IL31RA	Q8NI17	732 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	ACCS	Q96QU6	501 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	ZHX2	Q9Y6X8	837 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	CCDC188	H7C350	402 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	EXOC3	O60645	756 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	FAM153B	P0C7A2	387 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	SOX5	P35711	763 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	HSPA9	P38646	679 aa	Known RBP	28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	CUL1	Q13616	776 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	FAM153C	Q494X1	144 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	KSR1	Q8IVT5	923 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	C12orf56	Q8IXR9	622 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	VTI1A	Q96AJ9	217 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	ARL8A	Q96BM9	186 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	TAF1D	Q9H5J8	278 aa	Predicted RBP	28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245	FAM153A	Q9UHL3	310 aa		28.36	■■■□□ 2.13
HLA-C-208	ENST00000487245		K7ENM7	598 aa		28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	PGRMC1	O00264	195 aa	Known RBP	28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	KRT13	P13646	458 aa		28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	LMNB1	P20700	586 aa		28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	DNA2	P51530	1060 aa		28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	MRPS9	P82933	396 aa	Known RBP	28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	ITGB3BP	Q13352	177 aa	Predicted RBP	28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	SLC17A8	Q8NDX2	589 aa		28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	CCDC43	Q96MW1	224 aa	Known RBP	28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	28.35	■■■□□ 2.13	3e-7	■■□□□ 12.7
HLA-C-208	ENST00000487245	SYT11	Q9BT88	431 aa		28.35	■■■□□ 2.13
HLA-C-208	ENST00000487245	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	RARRES1	P49788	294 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	BFSP1	Q12934	665 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	XRRA1	Q6P2D8	792 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	IFT81	Q8WYA0	676 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	PIK3R5	Q8WYR1	880 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	IKZF4	Q9H2S9	585 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	ST6GALNAC4	Q9H4F1	302 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	PKD2L1	Q9P0L9	805 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	SAMM50	Q9Y512	469 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	PLS3	P13797	630 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	JAK3	P52333	1124 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	C4orf19	Q8IY42	314 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	METTL13	Q8N6R0	699 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	TRERF1	Q96PN7	1200 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	IWS1	Q96ST2	819 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	INTS2	Q9H0H0	1204 aa	Known RBP	28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	RSPH14	Q9UHP6	348 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	DNAJC12	Q9UKB3	198 aa		28.34	■■■□□ 2.13
HLA-C-208	ENST00000487245	GRIN2D	O15399	1336 aa		28.33	■■■□□ 2.13
HLA-C-208	ENST00000487245		F8VZ95	297 aa		28.33	■■■□□ 2.13
HLA-C-208	ENST00000487245	EIF3H	O15372	352 aa	Known RBP eCLIP	28.33	■■■□□ 2.13

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms