RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ATP6V1E2Q96A05 226 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 ZFP69BQ9UJL9 534 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 CALB1P05937 261 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 INPP1P49441 399 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 WDR75Q8IWA0 830 aaKnown RBP17.57■□□□□ 0.4
COL7A1-210ENST00000487017 WNT8AQ9H1J5 351 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 SNX12Q9UMY4 172 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 G3BP2Q9UN86 482 aaKnown RBP17.57■□□□□ 0.4
COL7A1-210ENST00000487017 CFLARO15519 480 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 OSBPP22059 807 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF667Q5HYK9 610 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 RCSD1Q6JBY9 416 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 RASGRP2Q7LDG7 609 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 PPARGC1AQ9UBK2 798 aaKnown RBP17.57■□□□□ 0.4
COL7A1-210ENST00000487017 FTLP02792 175 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-210ENST00000487017 RAD17O75943 681 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 TDP2O95551 362 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 CRKP46108 304 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 ANKRD7Q92527 254 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 FBXL5Q9UKA1 691 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 PXDNLA1KZ92 1463 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 GNGT2O14610 69 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 RPS6KA4O75676 772 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 DPYDQ12882 1025 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 KRT80Q6KB66 452 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 RSBN1LQ6PCB5 846 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-210ENST00000487017 RFFLQ8WZ73 363 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 IRX2Q9BZI1 471 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-210ENST00000487017 VIPAS39Q9H9C1 493 aa17.57■□□□□ 0.4
COL7A1-210ENST00000487017 TULP4Q9NRJ4 1543 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 SPAG7O75391 227 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 KRT38O76015 456 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 GGPS1O95749 300 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 PASD1Q8IV76 773 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF341Q9BYN7 854 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 TBC1D22BQ9NU19 505 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 TUBE1Q9UJT0 475 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 HSPA4LO95757 839 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF18P17022 549 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 FRMD5Q7Z6J6 570 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 ST13P4Q8IZP2 240 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-210ENST00000487017 C11orf70Q9BRQ4 267 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 LRRC1Q9BTT6 524 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 CD209Q9NNX6 404 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 PFASO15067 1338 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 SPATA31A3Q5VYP0 1347 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 SLC16A4O15374 487 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 DHX34Q14147 1143 aaKnown RBP17.56■□□□□ 0.4
COL7A1-210ENST00000487017 TFDP2Q14188 446 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 SUPT20HL1Q3ZLR7 823 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 ARMCX2Q7L311 632 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 SRBD1Q8N5C6 995 aaKnown RBP17.56■□□□□ 0.4
COL7A1-210ENST00000487017 CELF1Q92879 486 aaKnown RBP17.56■□□□□ 0.4
COL7A1-210ENST00000487017 PHF20Q9BVI0 1012 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 NGRNQ9NPE2 291 aaKnown RBP17.56■□□□□ 0.4
COL7A1-210ENST00000487017 WDR64B1ANS9 1081 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 BRAFP15056 766 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 CCDC137Q6PK04 289 aaKnown RBP17.56■□□□□ 0.4
COL7A1-210ENST00000487017 TMEM270Q6UE05 265 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 ADGRF4Q8IZF3 695 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 COL15A1P39059 1388 aa17.56■□□□□ 0.4
COL7A1-210ENST00000487017 PHEXP78562 749 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 NR1I3Q14994 352 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 EEPD1Q7L9B9 569 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 STAG2Q8N3U4 1231 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 CYTH2Q99418 400 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 STRIP2Q9ULQ0 834 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 CYP19A1P11511 503 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-210ENST00000487017 SOX5P35711 763 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 STAT3P40763 770 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 MDM2Q00987 491 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-210ENST00000487017 SNF8Q96H20 258 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 TGS1Q96RS0 853 aaKnown RBP17.55■□□□□ 0.4
COL7A1-210ENST00000487017 FNDC3AQ9Y2H6 1198 aaKnown RBP17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ORC6Q9Y5N6 252 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 USP31Q70CQ4 1352 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 GRAMD1BQ3KR37 738 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF394Q53GI3 561 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 PIP4K2CQ8TBX8 421 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 CENPKQ9BS16 269 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 SLC12A6Q9UHW9 1150 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 PLEKHG2Q9H7P9 1386 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 CACNB3P54284 484 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 KIF22Q14807 665 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 RYBPQ8N488 228 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-210ENST00000487017 PARD3BQ8TEW8 1205 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 NLRP4Q96MN2 994 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 CHP1Q99653 195 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 CCSER1Q9C0I3 900 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 POLD4Q9HCU8 107 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ASNSD1Q9NWL6 643 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 TRPC5Q9UL62 973 aaPredicted RBP17.55■□□□□ 0.4
COL7A1-210ENST00000487017 SPDYE2BA6NHP3 402 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 H0Y3Z8 333 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ASNSP08243 561 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 SPDYE6P0CI01 402 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 MYBL1P10243 752 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 GLYCTKQ8IVS8 523 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ADSSL1Q8N142 457 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 FAM213AQ9BRX8 229 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms