RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 RAD51AP2Q09MP3 1159 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 LHX8Q68G74 356 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 ISM2Q6H9L7 571 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 EFCAB12Q6NXP0 572 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 TAF2Q6P1X5 1199 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 MTHFD1LQ6UB35 978 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 IFNLR1Q8IU57 520 aaPredicted RBP11.2□□□□□ -0.62
USP39-215ENST00000481409 FAM114A1Q8IWE2 563 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 LINC01465Q8N7H1 131 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 C7orf31Q8N865 590 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 NELFBQ8WX92 580 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 ACCSQ96QU6 501 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 MAP7D2Q96T17 732 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 POLR3FQ9H1D9 316 aaPredicted RBP11.2□□□□□ -0.62
USP39-215ENST00000481409 RBSNQ9H1K0 784 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 GRPEL1Q9HAV7 217 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 KMT5AQ9NQR1 393 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 TYW1Q9NV66 732 aaKnown RBP11.2□□□□□ -0.62
USP39-215ENST00000481409 ARHGAP28Q9P2N2 729 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 TSKSQ9UJT2 592 aa11.2□□□□□ -0.62
USP39-215ENST00000481409 FRMPD3Q5JV73 1810 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 C17orf102A2RUQ5 167 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 TMEM150BA6NC51 233 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 K7ENM7 598 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 KIAA0391O15091 583 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 GNA14O95837 355 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 PGK1P00558 417 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 ASGR1P07306 291 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 HSPA1AP0DMV8 641 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 HSPA1BP0DMV9 641 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 SMIM10L2AP0DMW4 78 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 SMIM10L2BP0DMW5 78 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 CD44P16070 742 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 NPTX2P47972 431 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 PEX3P56589 373 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 FKBP3Q00688 224 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 BEX3Q00994 111 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 LRRC41Q15345 812 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 KCNA10Q16322 511 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 TPD52L1Q16890 204 aaPredicted RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 HS2ST1Q7LGA3 356 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 TRMT1LQ7Z2T5 733 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 HAUS6Q7Z4H7 955 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 RPAINQ86UA6 219 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 ZNF410Q86VK4 478 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 ZBTB8OSQ8IWT0 167 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 DHX40Q8IX18 779 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 TMEM161BQ8NDZ6 487 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 ANKRD20A12PQ8NF67 263 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 DEPTORQ8TB45 409 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 SCFD1Q8WVM8 642 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 ANP32BQ92688 251 aaKnown RBP11.19□□□□□ -0.62
USP39-215ENST00000481409 ARMC5Q96C12 935 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 GLT1D1Q96MS3 346 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 CEP63Q96MT8 703 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 THAP9Q9H5L6 903 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 PRDM10Q9NQV6 1147 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 GTF2IRD1Q9UHL9 959 aa11.19□□□□□ -0.62
USP39-215ENST00000481409 CCDC169A6NNP5 214 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 SFI1A8K8P3 1242 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 KBTBD13C9JR72 458 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 DNM1LO00429 736 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 CAND2O75155 1236 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 PIGRP01833 764 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 GLRA2P23416 452 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 ACLYP53396 1101 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 STRN3Q13033 797 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 ZCWPW2Q504Y3 356 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 CDCA2Q69YH5 1023 aaPredicted RBP11.18□□□□□ -0.62
USP39-215ENST00000481409 KLHL10Q6JEL2 608 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 TTI2Q6NXR4 508 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 MAEAQ7L5Y9 396 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 RSPH3Q86UC2 560 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 SLC9A9Q8IVB4 645 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 MAP4K3Q8IVH8 894 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 C12orf56Q8IXR9 622 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 SMYD4Q8IYR2 804 aaPredicted RBP11.18□□□□□ -0.62
USP39-215ENST00000481409 AOPEPQ8N6M6 819 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 LMBR1Q8WVP7 490 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 PRPF31Q8WWY3 499 aaKnown RBP11.18□□□□□ -0.62
USP39-215ENST00000481409 TMEM143Q96AN5 459 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 LENG1Q96BZ8 264 aaPredicted RBP11.18□□□□□ -0.62
USP39-215ENST00000481409 CTAGE1Q96RT6 745 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 SH2D3AQ9BRG2 576 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 INO80BQ9C086 356 aaPredicted RBP11.18□□□□□ -0.62
USP39-215ENST00000481409 GBP3Q9H0R5 595 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 KCTD10Q9H3F6 313 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 SUGCTQ9HAC7 445 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 SUCLA2Q9P2R7 463 aaPredicted RBP11.18□□□□□ -0.62
USP39-215ENST00000481409 OGDHLQ9ULD0 1010 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 PHF24Q9UPV7 400 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 CTNND2Q9UQB3 1225 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 NFE2L3Q9Y4A8 694 aa11.18□□□□□ -0.62
USP39-215ENST00000481409 MYADML2A6NDP7 307 aa11.17□□□□□ -0.62
USP39-215ENST00000481409 K7ERI5 159 aa11.17□□□□□ -0.62
USP39-215ENST00000481409 MYBP10242 640 aa11.17□□□□□ -0.62
USP39-215ENST00000481409 PTGS1P23219 599 aa11.17□□□□□ -0.62
USP39-215ENST00000481409 EEF1GP26641 437 aaKnown RBP11.17□□□□□ -0.62
USP39-215ENST00000481409 NMT1P30419 496 aaKnown RBP11.17□□□□□ -0.62
USP39-215ENST00000481409 PHKA2P46019 1235 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms