RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NFATC3Q12968 1075 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 SEMA5AQ13591 1074 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 NOLC1Q14978 699 aaKnown RBP eCLIP6.5□□□□□ -1.37
UPF3B-203ENST00000478840 STILQ15468 1287 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 CR1LQ2VPA4 569 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 Q8N3U1 123 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 CDYL2Q8N8U2 506 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 FAM156AQ8NDB6 213 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 AGBL5Q8NDL9 886 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 PPP1R35Q8TAP8 253 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 IGDCC4Q8TDY8 1250 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 KCMF1Q9P0J7 381 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 EVLQ9UI08 416 aaPredicted RBP6.5□□□□□ -1.37
UPF3B-203ENST00000478840 L1RE1Q9UN81 338 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 ANGEL1Q9UNK9 670 aaKnown RBP6.5□□□□□ -1.37
UPF3B-203ENST00000478840 PCDHB6Q9Y5E3 794 aa6.5□□□□□ -1.37
UPF3B-203ENST00000478840 CCDC154A6NI56 674 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 PCDH8O95206 1070 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 APEX1P27695 318 aaKnown RBP6.49□□□□□ -1.37
UPF3B-203ENST00000478840 SERPINB3P29508 390 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 MCAMP43121 646 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 AK2P54819 239 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 YBX1P67809 324 aaKnown RBP6.49□□□□□ -1.37
UPF3B-203ENST00000478840 PFKPQ01813 784 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 PPARAQ07869 468 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 PLEKHN1Q494U1 663 aaPredicted RBP6.49□□□□□ -1.37
UPF3B-203ENST00000478840 MUM1L1Q5H9M0 696 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 LRSAM1Q6UWE0 723 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 BTNL9Q6UXG8 535 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 ETV3LQ6ZN32 361 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 BMP8AQ7Z5Y6 402 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 CAMKK1Q8N5S9 505 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 GAB3Q8WWW8 586 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 CPA5Q8WXQ8 436 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 PAWRQ96IZ0 340 aaKnown RBP6.49□□□□□ -1.37
UPF3B-203ENST00000478840 LRFN3Q9BTN0 628 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 RNF32Q9H0A6 362 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 OR10A5Q9H207 317 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 GREM2Q9H772 168 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 SLC39A2Q9NP94 309 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 KLHL14Q9P2G3 628 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 FTSJ1Q9UET6 329 aa6.49□□□□□ -1.37
UPF3B-203ENST00000478840 CUTAO60888 179 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 SEC24DO94855 1032 aaPredicted RBP6.48□□□□□ -1.37
UPF3B-203ENST00000478840 ALDH2P05091 517 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 MYBP10242 640 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 ALDH5A1P51649 535 aaPredicted RBP6.48□□□□□ -1.37
UPF3B-203ENST00000478840 KRT72Q14CN4 511 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 RAB3GAP1Q15042 981 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 PLCL1Q15111 1095 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 ANO6Q4KMQ2 910 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 XP32Q5T750 250 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 KANK2Q63ZY3 851 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 KLHDC10Q6PID8 442 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 ZC3H14Q6PJT7 736 aaKnown RBP6.48□□□□□ -1.37
UPF3B-203ENST00000478840 KRT78Q8N1N4 520 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 DTX3Q8N9I9 347 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 FLAD1Q8NFF5 587 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 PPP1R14CQ8TAE6 165 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 ABHD4Q8TB40 342 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 NRG4Q8WWG1 115 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 B3GNT5Q9BYG0 378 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 NLRC4Q9NPP4 1024 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 HCFC2Q9Y5Z7 792 aa6.48□□□□□ -1.37
UPF3B-203ENST00000478840 CFAP20Q9Y6A4 193 aaKnown RBP6.48□□□□□ -1.37
UPF3B-203ENST00000478840 NUDT19A8MXV4 375 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 HRKO00198 91 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 ABLIM1O14639 778 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 NRP2O60462 931 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 CACNB3P54284 484 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 NKX3-2P78367 333 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 MGAT2Q10469 447 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 LLGL1Q15334 1064 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 ZRSR2Q15696 482 aaKnown RBP6.47□□□□□ -1.37
UPF3B-203ENST00000478840 FAM83BQ5T0W9 1011 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 GJC2Q5T442 439 aaPredicted RBP6.47□□□□□ -1.37
UPF3B-203ENST00000478840 VASNQ6EMK4 673 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 NPNTQ6UXI9 565 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 LIPIQ6XZB0 460 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 CCDC149Q6ZUS6 474 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 GAREM2Q75VX8 874 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 CXXC5Q7LFL8 322 aaKnown RBP6.47□□□□□ -1.37
UPF3B-203ENST00000478840 ENAHQ8N8S7 591 aaPredicted RBP6.47□□□□□ -1.37
UPF3B-203ENST00000478840 HDAC10Q969S8 669 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 INTS4Q96HW7 963 aaKnown RBP6.47□□□□□ -1.37
UPF3B-203ENST00000478840 PTPN18Q99952 460 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 INTUQ9ULD6 942 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 USP18Q9UMW8 372 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 DAAM1Q9Y4D1 1078 aa6.47□□□□□ -1.37
UPF3B-203ENST00000478840 SCO2A0A1W2PP80 73 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 GOLIM4O00461 696 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 SLC16A6O15403 523 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 FBLN1P23142 703 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 HTR1BP28222 390 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 STAT5AP42229 794 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 AFMP43652 599 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 CCT2P78371 535 aaKnown RBP6.46□□□□□ -1.38
UPF3B-203ENST00000478840 DSC2Q02487 901 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 PPP3CAQ08209 521 aa6.46□□□□□ -1.38
UPF3B-203ENST00000478840 KIAA0753Q2KHM9 967 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms