RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	HAUS3	Q68CZ6	603 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	FAM43B	Q6ZT52	329 aa	Predicted RBP	12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	RTN4RL1	Q86UN2	441 aa	Predicted RBP	12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	KSR1	Q8IVT5	923 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	CMTR2	Q8IYT2	770 aa	Known RBP	12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	LRFN3	Q9BTN0	628 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	TMEM60	Q9H2L4	133 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	ADAMTS10	Q9H324	1103 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	TMX1	Q9H3N1	280 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	AAAS	Q9NRG9	546 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	RGS18	Q9NS28	235 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	LMCD1	Q9NZU5	365 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	COL4A6	Q14031	1691 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	XIRP2	A4UGR9	3374 aa		12.85	□□□□□ -0.35
CPNE1-222	ENST00000473373	USO1	O60763	962 aa	Known RBP	12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	SLITRK3	O94933	977 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	GATM	P50440	423 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	SPIRE1	Q08AE8	756 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	NCBP1	Q09161	790 aa	Known RBP	12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	TFDP1	Q14186	410 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	NBR1	Q14596	966 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	TMEM132A	Q24JP5	1023 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	TIGD5	Q53EQ6	642 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	LARP1B	Q659C4	914 aa	Known RBP	12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	MAEA	Q7L5Y9	396 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	LINC01465	Q8N7H1	131 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	PIGO	Q8TEQ8	1089 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	HLA-C	Q95604	372 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	TMEM161A	Q9NX61	479 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	COG5	Q9UP83	839 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	PCDHB12	Q9Y5F1	795 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	GTF3C3	Q9Y5Q9	886 aa		12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	MRPL42	Q9Y6G3	142 aa	Known RBP	12.84	□□□□□ -0.35
CPNE1-222	ENST00000473373	MYO7A	Q13402	2215 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	ARHGEF35	A5YM69	484 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373		H3BNC9	293 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	ZBTB39	O15060	712 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	ASAP2	O43150	1006 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	STBD1	O95210	358 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	CD2BP2	O95400	341 aa	Known RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	RB1	P06400	928 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	FGFR1	P11362	822 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	CA8	P35219	290 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	BMPR1A	P36894	532 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	CCT6A	P40227	531 aa	Known RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	PHKA2	P46019	1235 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	MXD4	Q14582	209 aa	Predicted RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	ZRSR1	Q15695	479 aa	Known RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	THNSL1	Q8IYQ7	743 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	ZNF579	Q8NAF0	562 aa	Known RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	RNF149	Q8NC42	400 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	PRPF31	Q8WWY3	499 aa	Known RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	PPP2R3C	Q969Q6	453 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	MRPL38	Q96DV4	380 aa	Known RBP	12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	MTMR9	Q96QG7	549 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	TUFT1	Q9NNX1	390 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373	ANKEF1	Q9NU02	776 aa		12.83	□□□□□ -0.36
CPNE1-222	ENST00000473373		A0A087WWV3	80 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	IGKV6-21	A0A0C4DH24	114 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	VPS37C	A5D8V6	355 aa	Predicted RBP	12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	FAM86C2P	A6NEL3	165 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373		C9IYK1	514 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	INO80B-WBP1	J3KQ70	363 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	LPXN	O60711	386 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	DGAT1	O75907	488 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	SKI	P12755	728 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	LAMTOR4	Q0VGL1	99 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	PTGDR	Q13258	359 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	LONRF3	Q496Y0	759 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	TMEM31	Q5JXX7	168 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	FAM102B	Q5T8I3	360 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	SRGAP1	Q7Z6B7	1085 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	MICAL1	Q8TDZ2	1067 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	SNX29	Q8TEQ0	813 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	ZNF689	Q96CS4	500 aa	Predicted RBP	12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	NACC1	Q96RE7	527 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	PLVAP	Q9BX97	442 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	DHX33	Q9H6R0	707 aa	Known RBP	12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	ELAC1	Q9H777	363 aa	Known RBP	12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	ALG13	Q9NP73	1137 aa	Known RBP	12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	LRWD1	Q9UFC0	647 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	STK24	Q9Y6E0	443 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	TRANK1	O15050	2925 aa		12.82	□□□□□ -0.36
CPNE1-222	ENST00000473373	LRRIQ4	A6NIV6	560 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	HSP90AA1	P07900	732 aa	Known RBP	12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	U2AF2	P26368	475 aa	Known RBP eCLIP	12.81	□□□□□ -0.36	8e-57	■■■■□ 22.3
CPNE1-222	ENST00000473373	RAB27A	P51159	221 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	RNASEL	Q05823	741 aa	Known RBP	12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	RILPL1	Q5EBL4	403 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	KRT79	Q5XKE5	535 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	POTEG	Q6S5H5	508 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	DTHD1	Q6ZMT9	781 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	FERMT3	Q86UX7	667 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	CATSPER3	Q86XQ3	398 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	ECHDC2	Q86YB7	292 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	LRRC43	Q8N309	656 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	RASSF8	Q8NHQ8	419 aa		12.81	□□□□□ -0.36
CPNE1-222	ENST00000473373	CDK5RAP3	Q96JB5	506 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms