RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 NAALADL2Q58DX5 795 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 ODR4Q5SWX8 454 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 RASIP1Q5U651 963 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 RESP18Q5W5W9 173 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 FAM228AQ86W67 206 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 PDILTQ8N807 584 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 RNF149Q8NC42 400 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 KIFAP3Q92845 792 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 RNPC3Q96LT9 517 aaKnown RBP13.25□□□□□ -0.29
VPS13D-204ENST00000469054 TIPINQ9BVW5 301 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 INO80BQ9C086 356 aaPredicted RBP13.25□□□□□ -0.29
VPS13D-204ENST00000469054 IFT122Q9HBG6 1241 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 POLD4Q9HCU8 107 aa13.25□□□□□ -0.29
VPS13D-204ENST00000469054 CXXC1Q9P0U4 656 aaPredicted RBP13.25□□□□□ -0.29
VPS13D-204ENST00000469054 ZBBXA8MT70 800 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 EFCAB14O75071 495 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 HIP1RO75146 1068 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 CMA1P23946 247 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 STAT6P42226 847 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 PTENP60484 403 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 PAK2Q13177 524 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 CAPSQ13938 189 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 ARSHQ5FYA8 562 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 FAM43BQ6ZT52 329 aaPredicted RBP13.24□□□□□ -0.29
VPS13D-204ENST00000469054 SRGAP1Q7Z6B7 1085 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 GPBP1Q86WP2 473 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 FTHL17Q9BXU8 183 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 ERVK-5Q9HDB9 667 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 ST3GAL5Q9UNP4 418 aa13.24□□□□□ -0.29
VPS13D-204ENST00000469054 WDR81Q562E7 1941 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 A0A1W2PQ27 194 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 A0A1W2PQ64 194 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 A0A1W2PQD8 194 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 CSDE1O75534 798 aaKnown RBP13.23□□□□□ -0.29
VPS13D-204ENST00000469054 PHKA2P46019 1235 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 MAPK7Q13164 816 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 PPP2R5AQ15172 486 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 E2F4Q16254 413 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 SV2BQ7L1I2 683 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 IFNLR1Q8IU57 520 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-204ENST00000469054 DAW1Q8N136 415 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 IQUBQ8NA54 791 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 BSNDQ8WZ55 320 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 IFT74Q96LB3 600 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 DRC1Q96MC2 740 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 PYM1Q9BRP8 204 aaKnown RBP13.23□□□□□ -0.29
VPS13D-204ENST00000469054 NFKBIZQ9BYH8 718 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 TMX1Q9H3N1 280 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 KCNH3Q9ULD8 1083 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 SLC4A7Q9Y6M7 1214 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 CEP290O15078 2479 aa13.23□□□□□ -0.29
VPS13D-204ENST00000469054 NPHP3-ACAD11A0A0J9YXS1 232 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 FAM237AA0A1B0GTK4 181 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 A0A1B0GVL5 298 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 LRRIQ4A6NIV6 560 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 SFI1A8K8P3 1242 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 ENPP3O14638 875 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 POLR2DO15514 142 aaKnown RBP13.22□□□□□ -0.29
VPS13D-204ENST00000469054 KRT18P05783 430 aaKnown RBP13.22□□□□□ -0.29
VPS13D-204ENST00000469054 FGFR4P22455 802 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 SFPQP23246 707 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS13D-204ENST00000469054 NAMPTP43490 491 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 KCNJ6P48051 423 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 WDR5P61964 334 aaKnown RBP13.22□□□□□ -0.29
VPS13D-204ENST00000469054 RAD51AP2Q09MP3 1159 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS13D-204ENST00000469054 PHOSPHO2Q8TCD6 241 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 DHX58Q96C10 678 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 CUEDC2Q9H467 287 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 MINDY3Q9H8M7 445 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 C17orf75Q9HAS0 396 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 ODF2LQ9ULJ1 636 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 HPSEQ9Y251 543 aa13.22□□□□□ -0.29
VPS13D-204ENST00000469054 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 MYMKA6NI61 221 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 INO80B-WBP1J3KQ70 363 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 PFKFB1P16118 471 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 PEX3P56589 373 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 MBTD1Q05BQ5 628 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 DMP1Q13316 513 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 GIT2Q14161 759 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 PCBP1Q15365 356 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 CSPP1Q1MSJ5 1256 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 LRIT3Q3SXY7 679 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 TPRNQ4KMQ1 711 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 CDCA2Q69YH5 1023 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 CATSPER4Q7RTX7 472 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 RTN4RL1Q86UN2 441 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 DEPTORQ8TB45 409 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 MRPS27Q92552 414 aaKnown RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 REEP2Q9BRK0 252 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 C2orf40Q9H1Z8 148 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-204ENST00000469054 TNMDQ9H2S6 317 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 KCNG1Q9UIX4 513 aa13.21□□□□□ -0.29
VPS13D-204ENST00000469054 TANC1Q9C0D5 1861 aa13.21□□□□□ -0.3
VPS13D-204ENST00000469054 MYH15Q9Y2K3 1946 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 GOLGA6L4A6NEF3 574 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms