RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 LAG3P18627 525 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 RBM25P49756 843 aaKnown RBP21.32■■□□□ 1
COL7A1-207ENST00000467985 CYP4A11Q02928 519 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 ORC2Q13416 577 aaPredicted RBP21.32■■□□□ 1
COL7A1-207ENST00000467985 TPH2Q8IWU9 490 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 TCP11Q8WWU5 503 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 NLRP4Q96MN2 994 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 NECAB3Q96P71 396 aaPredicted RBP21.32■■□□□ 1
COL7A1-207ENST00000467985 EIF2AK1Q9BQI3 630 aaKnown RBP21.32■■□□□ 1
COL7A1-207ENST00000467985 TRAIPQ9BWF2 469 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 FOXP1Q9H334 677 aaPredicted RBP21.32■■□□□ 1
COL7A1-207ENST00000467985 FAM50BQ9Y247 325 aa21.32■■□□□ 1
COL7A1-207ENST00000467985 ASAP2O43150 1006 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 SLITRK3O94933 977 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 LYPLA2O95372 231 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 FGFR4P22455 802 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 TXKP42681 527 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 CAMK1Q14012 370 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 CTTNQ14247 550 aaKnown RBP21.31■■□□□ 1
COL7A1-207ENST00000467985 XKR9Q5GH70 373 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 LRRC43Q8N309 656 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 FAM184AQ8NB25 1140 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 RNF169Q8NCN4 708 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 POF1BQ8WVV4 589 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 PRPF31Q8WWY3 499 aaKnown RBP21.31■■□□□ 1
COL7A1-207ENST00000467985 MTMR9Q96QG7 549 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 HSD17B14Q9BPX1 270 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 CLDND1Q9NY35 253 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 ATG2AQ2TAZ0 1938 aa21.31■■□□□ 1
COL7A1-207ENST00000467985 CSDE1O75534 798 aaKnown RBP21.3■■□□□ 1
COL7A1-207ENST00000467985 DNAJB1P25685 340 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 GUCY1B3Q02153 619 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 HYAL1Q12794 435 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 EMC2Q15006 297 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 CTC1Q2NKJ3 1217 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 PTCRAQ6ISU1 281 aaPredicted RBP21.3■■□□□ 1
COL7A1-207ENST00000467985 EP400NLQ6ZTU2 488 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 CATSPER4Q7RTX7 472 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 KSR1Q8IVT5 923 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 ZNF579Q8NAF0 562 aaKnown RBP21.3■■□□□ 1
COL7A1-207ENST00000467985 COLGALT1Q8NBJ5 622 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 FBXO18Q8NFZ0 1043 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.3■■□□□ 1
COL7A1-207ENST00000467985 CASD1Q96PB1 797 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 CWH43Q9H720 699 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 ANKEF1Q9NU02 776 aa21.3■■□□□ 1
COL7A1-207ENST00000467985 PIN4Q9Y237 131 aaKnown RBP21.3■■□□□ 1
COL7A1-207ENST00000467985 FGF18O76093 207 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 PPM1AP35813 382 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 PHKA2P46019 1235 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 RAB27AP51159 221 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 LAMTOR4Q0VGL1 99 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 GNL2Q13823 731 aaKnown RBP21.29■■□□□ 1
COL7A1-207ENST00000467985 RABEP1Q15276 862 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 TWF2Q6IBS0 349 aaKnown RBP21.29■■□□□ 1
COL7A1-207ENST00000467985 SRGAP1Q7Z6B7 1085 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 ZNF598Q86UK7 904 aaKnown RBP21.29■■□□□ 1
COL7A1-207ENST00000467985 THNSL1Q8IYQ7 743 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 TMEM143Q96AN5 459 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 CCDC43Q96MW1 224 aaKnown RBP21.29■■□□□ 1
COL7A1-207ENST00000467985 MRPL9Q9BYD2 267 aaKnown RBP21.29■■□□□ 1
COL7A1-207ENST00000467985 UPF2Q9HAU5 1272 aaKnown RBP21.29■■□□□ 1
COL7A1-207ENST00000467985 IFT122Q9HBG6 1241 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 RNF19AQ9NV58 838 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 ARID2Q68CP9 1835 aa21.29■■□□□ 1
COL7A1-207ENST00000467985 GRXCR2A6NFK2 248 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 H3BQ06 376 aaPredicted RBP21.28■■□□□ 1
COL7A1-207ENST00000467985 WNT7AO00755 349 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 SRGAP2CP0DJJ0 459 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 ATP2B1P20020 1258 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 MCM7P33993 719 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 MXD4Q14582 209 aaPredicted RBP21.28■■□□□ 1
COL7A1-207ENST00000467985 PDE12Q6L8Q7 609 aaKnown RBP21.28■■□□□ 1
COL7A1-207ENST00000467985 MTRQ99707 1265 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 PUF60Q9UHX1 559 aaKnown RBP21.28■■□□□ 1
COL7A1-207ENST00000467985 LZTS1Q9Y250 596 aa21.28■■□□□ 1
COL7A1-207ENST00000467985 C5orf42Q9H799 3197 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 PLXNA4Q9HCM2 1894 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 FSD2A1L4K1 749 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 CARNS1A5YM72 827 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 ZBTB39O15060 712 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 ST18O60284 1047 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 DGAT1O75907 488 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 CSPG5O95196 566 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 XRCC6P12956 609 aaKnown RBP eCLIP21.27■■□□□ 1
COL7A1-207ENST00000467985 TRAPPC10P48553 1259 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 PLCB3Q01970 1234 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 PCBP1Q15365 356 aaKnown RBP eCLIP21.27■■□□□ 1
COL7A1-207ENST00000467985 CLLU1OSQ5K130 101 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 FERMT3Q86UX7 667 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 NOSTRINQ8IVI9 506 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 ZNF558Q96NG5 402 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 IGFLR1Q9H665 355 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 TLR9Q9NR96 1032 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 AGPAT5Q9NUQ2 364 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 KIF3AQ9Y496 699 aa21.27■■□□□ 1
COL7A1-207ENST00000467985 ZNF623O75123 536 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 ATF7P17544 494 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-207ENST00000467985 LTBRP36941 435 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 KCNT2Q6UVM3 1135 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms