RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 NPHP3-ACAD11A0A0J9YXS1 232 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 GPR182O15218 404 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 ARHGEF15O94989 841 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 AMHP03971 560 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 PLCG1P19174 1290 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 NCLP19338 710 aaKnown RBP12.95□□□□□ -0.34
CUX1-207ENST00000465461 DNAJB2P25686 324 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 CAPSQ13938 189 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 TPRNQ4KMQ1 711 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 RINT1Q6NUQ1 792 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 KRI1Q8N9T8 703 aaKnown RBP12.95□□□□□ -0.34
CUX1-207ENST00000465461 CALML4Q96GE6 196 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 ADAM2Q99965 735 aa12.95□□□□□ -0.34
CUX1-207ENST00000465461 A0A087X0B3 334 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 LCHNA4D1U4 455 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 SFI1A8K8P3 1242 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 GAS2O43903 313 aaKnown RBP12.94□□□□□ -0.34
CUX1-207ENST00000465461 YEATS4O95619 227 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 PLA2G4BP0C869 781 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 DDIT3P35638 169 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 SLC12A3P55017 1021 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 MCM6Q14566 821 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 C1orf186Q6ZWK4 172 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 SPRED2Q7Z698 418 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 ZNF410Q86VK4 478 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 PHOSPHO2Q8TCD6 241 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 TIFAQ96CG3 184 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 ZBED2Q9BTP6 218 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 KIFC3Q9BVG8 833 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 CCSER1Q9C0I3 900 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 NT5C3AQ9H0P0 336 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 TTYH1Q9H313 450 aaPredicted RBP12.94□□□□□ -0.34
CUX1-207ENST00000465461 BLOC1S4Q9NUP1 217 aa12.94□□□□□ -0.34
CUX1-207ENST00000465461 DENND3A2RUS2 1198 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 LRRIQ4A6NIV6 560 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 ASAP2O43150 1006 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 TLL1O43897 1013 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 EFCAB14O75071 495 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 HIP1RO75146 1068 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 PPP6R2O75170 966 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 GJB5O95377 273 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 CA3P07451 260 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 LIG1P18858 919 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 GATMP50440 423 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 DSC3Q14574 896 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 MXD4Q14582 209 aaPredicted RBP12.93□□□□□ -0.34
CUX1-207ENST00000465461 SHC4Q6S5L8 630 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 CATSPER4Q7RTX7 472 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 PDILTQ8N807 584 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 SYT2Q8N9I0 419 aaPredicted RBP12.93□□□□□ -0.34
CUX1-207ENST00000465461 MCPH1Q8NEM0 835 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 RAD54LQ92698 747 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 TOP1MTQ969P6 601 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 CERS4Q9HA82 394 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 RGS18Q9NS28 235 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 MSRAQ9UJ68 235 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 PCDHA7Q9UN72 937 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 USP20Q9Y2K6 914 aa12.93□□□□□ -0.34
CUX1-207ENST00000465461 INO80B-WBP1J3KQ70 363 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 ME1P48163 572 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 PTENP60484 403 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 CDC42EP1Q00587 391 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 MAPK7Q13164 816 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 TFDP1Q14186 410 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 RAB30Q15771 203 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 LONRF3Q496Y0 759 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 ARSHQ5FYA8 562 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 AXDND1Q5T1B0 1012 aaPredicted RBP12.92□□□□□ -0.34
CUX1-207ENST00000465461 SRGAP1Q7Z6B7 1085 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 DAW1Q8N136 415 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 CPB2Q96IY4 423 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 FTHL17Q9BXU8 183 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 INO80BQ9C086 356 aaPredicted RBP12.92□□□□□ -0.34
CUX1-207ENST00000465461 TSPYL2Q9H2G4 693 aaPredicted RBP12.92□□□□□ -0.34
CUX1-207ENST00000465461 GDPD2Q9HCC8 539 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 CCDC39Q9UFE4 941 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 RCOR1Q9UKL0 485 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 CFAP45Q9UL16 551 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 PCDHA11Q9Y5I1 949 aa12.92□□□□□ -0.34
CUX1-207ENST00000465461 MORC2Q9Y6X9 1032 aaPredicted RBP12.92□□□□□ -0.34
CUX1-207ENST00000465461 LAMA3Q16787 3333 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 C9IYK1 514 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 B4GALT5O43286 388 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 CUTAO60888 179 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 ZSCAN20P17040 1043 aaPredicted RBP12.91□□□□□ -0.34
CUX1-207ENST00000465461 SFPQP23246 707 aaKnown RBP eCLIP12.91□□□□□ -0.34
CUX1-207ENST00000465461 ANP32AP39687 249 aaKnown RBP12.91□□□□□ -0.34
CUX1-207ENST00000465461 PHKA2P46019 1235 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 PEX3P56589 373 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 MBTD1Q05BQ5 628 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 NAALADL2Q58DX5 795 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 ODR4Q5SWX8 454 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 ZNF697Q5TEC3 545 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 RRAGBQ5VZM2 374 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 GPBP1Q86WP2 473 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 CDR2LQ86X02 465 aaPredicted RBP12.91□□□□□ -0.34
CUX1-207ENST00000465461 ZNF710Q8N1W2 664 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 DEFB123Q8N688 67 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 KCNG4Q8TDN1 519 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 LEO1Q8WVC0 666 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms