RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ATG9AQ7Z3C6 839 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 REXO1L1PQ8IX06 675 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 MCUQ8NE86 351 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 INTS2Q9H0H0 1204 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 E9PCH4 1651 aa20.31■□□□□ 0.84
CCDC88B-204ENST00000463837 STAT4Q14765 748 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 HIPK4Q8NE63 616 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 ARMC2Q8NEN0 867 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 APOBEC2Q9Y235 224 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 SLC16A3O15427 465 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 CALB1P05937 261 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 SOX5P35711 763 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 ITKQ08881 620 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 TRIM28Q13263 835 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 ERICH1Q86X53 443 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 FOXP4Q8IVH2 680 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 CNPY4Q8N129 248 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 RNF169Q8NCN4 708 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 C3orf20Q8ND61 904 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 ZNF512BQ96KM6 892 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 FUCA2Q9BTY2 467 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 TRIM9Q9C026 710 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 EIF4E1BA6NMX2 242 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 CFLARO15519 480 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 OSBPP22059 807 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 AP2B1P63010 937 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 TRIM15Q9C019 465 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 MRPL40Q9NQ50 206 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 TSPOAP1O95153 1857 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 E9PMD0 336 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 PSAPP07602 524 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 PRELPP51888 382 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 ZC3H15Q8WU90 426 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 NRBF2Q96F24 287 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 PCDHA6Q9UN73 950 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 PCDHA8Q9Y5H6 950 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 DLC1Q96QB1 1528 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 JAK3P52333 1124 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 TFDP2Q14188 446 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 DPP9Q86TI2 863 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 TTC17Q96AE7 1141 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 NUP85Q9BW27 656 aa20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 UPF3AQ9H1J1 476 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-204ENST00000463837 RASSF10A6NK89 507 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 IRAK1P51617 712 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 WDR93Q6P2C0 686 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 ENOSF1Q7L5Y1 443 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 SPATA21Q7Z572 469 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 IGDCC4Q8TDY8 1250 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 PLA2G12BQ9BX93 195 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 TRMT10CQ7L0Y3 403 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 PIGBQ92521 554 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 ARFIP2P53365 341 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 GRAPQ13588 217 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 GRAPLQ8TC17 118 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 PDXKO00764 312 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 ZNF185O15231 689 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 CYP27B1O15528 508 aa20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 BRD2P25440 801 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 RNPC3Q96LT9 517 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-204ENST00000463837 USP17L5A8MUK1 530 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 APOEP02649 317 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 GYPCP04921 128 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 LMTK2Q8IWU2 1503 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 SFI1A8K8P3 1242 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 PSMA2P25787 234 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 LSP1P33241 339 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 ZNF211Q13398 564 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 TMEM179Q6ZVK1 233 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 RSPH3Q86UC2 560 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 SLC38A10Q9HBR0 1119 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 STRIP2Q9ULQ0 834 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 MROH7-TTC4A0A0A0MT08 1334 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 GUCY1A2P33402 732 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 PLA2G4AP47712 749 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 TRIML2Q8N7C3 387 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 DNAAF3Q8N9W5 541 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 TMEM35BQ8NCS4 154 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 FAF2Q96CS3 445 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 ORC6Q9Y5N6 252 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 PDS5AQ29RF7 1337 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 FTLP02792 175 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 CYP2D6P10635 497 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 IL1RL1Q01638 556 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 KIAA1755Q5JYT7 1200 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 FBXW10Q5XX13 1052 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 RSBN1LQ6PCB5 846 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 SH3RF3Q8TEJ3 882 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 DYDC2Q96IM9 177 aa20.28■□□□□ 0.84
CCDC88B-204ENST00000463837 FCER1AP12319 257 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 TRIM72Q6ZMU5 477 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 TRIM59Q8IWR1 403 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 AMACRQ9UHK6 382 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 FIS1Q9Y3D6 152 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 FHOD1Q9Y613 1164 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 USP11P51784 963 aa20.27■□□□□ 0.84
CCDC88B-204ENST00000463837 RAD23BP54727 409 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms