RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 RPA1P27694 616 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 CDR2Q01850 454 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 TEDDM1Q5T9Z0 273 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 SESTD1Q86VW0 696 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ZNF653Q96CK0 615 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 CEP95Q96GE4 821 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 TRIM31Q9BZY9 425 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 EPS15L1Q9UBC2 864 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 TRAF3IP3Q9Y228 551 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 MAPK4P31152 587 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 HSD17B3P37058 310 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 SATB1Q01826 763 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 MCL1Q07820 350 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PRR16Q569H4 304 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 SPDYAQ5MJ70 313 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PI16Q6UXB8 463 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 MAPKAPK5Q8IW41 473 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 SRBD1Q8N5C6 995 aaKnown RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TSC22D3Q99576 134 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 A0A087WWV3 80 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 ARHGAP10A1A4S6 786 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 K7ENM7 598 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 AP3B1O00203 1094 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TSHRP16473 764 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 HDLBPQ00341 1268 aaKnown RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TAF11Q15544 211 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 SLFN13Q68D06 897 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 RSAD2Q8WXG1 361 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 INTS13Q9NVM9 706 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PI4KBQ9UBF8 816 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 SORCS3Q9UPU3 1222 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PKD1L3Q7Z443 1732 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TIAM2Q8IVF5 1701 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TRIM66O15016 1216 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 CCDC15Q0P6D6 951 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 RINT1Q6NUQ1 792 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 SDCCAG8Q86SQ7 713 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 RHOT1Q8IXI2 618 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 INPP5DQ92835 1189 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 RIOK1Q9BRS2 568 aaKnown RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 EFHD1Q9BUP0 239 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 ENO4A6NNW6 628 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TOMM70O94826 608 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 BFSP1Q12934 665 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 ADRM1Q16186 407 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TRIM59Q8IWR1 403 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TPCN2Q8NHX9 752 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 EHD4Q9H223 541 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 GPCPD1Q9NPB8 672 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 FAM217BQ9NTX9 383 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PPME1Q9Y570 386 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 CASQ2O14958 399 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 GFPT1Q06210 699 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 STK4Q13043 487 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 NFIL3Q16649 462 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 KYAT1Q16773 422 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PREPLQ4J6C6 727 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 C15orf52Q6ZUT6 534 aaKnown RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TLR10Q9BXR5 811 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 VPS37BQ9H9H4 285 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 TRIM49BA6NDI0 452 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 HSPA13P48723 471 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 KLC1Q07866 573 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 DAB2IPQ5VWQ8 1189 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 NUGGCQ68CJ6 796 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 NELFCDQ8IXH7 590 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 IQCKQ8N0W5 287 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 CYP26B1Q9NR63 512 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 C21orf2O43822 256 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 EPM2AIP1Q7L775 607 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 VCPIP1Q96JH7 1222 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 GCOM2Q9BZD3 368 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 MINPP1Q9UNW1 487 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PPFIA2O75334 1257 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 GARSP41250 739 aaKnown RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 HERVK_113P62684 666 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 KRT76Q01546 638 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 GUCY1A3Q02108 690 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 MFSD5Q6N075 450 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 CCDC137Q6PK04 289 aaKnown RBP7.53□□□□□ -1.2
SYNE1-216ENST00000461872 MAGEB18Q96M61 343 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 PIGSQ96S52 555 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 ADAMTS7Q9UKP4 1686 aa7.53□□□□□ -1.2
SYNE1-216ENST00000461872 KLHDC7AQ5VTJ3 777 aa7.52□□□□□ -1.2
SYNE1-216ENST00000461872 POTEAQ6S8J7 498 aa7.52□□□□□ -1.2
SYNE1-216ENST00000461872 IRX2Q9BZI1 471 aaPredicted RBP7.52□□□□□ -1.2
SYNE1-216ENST00000461872 DPH5Q9H2P9 285 aa7.52□□□□□ -1.2
SYNE1-216ENST00000461872 MLXIPQ9HAP2 919 aa7.52□□□□□ -1.2
SYNE1-216ENST00000461872 PRDM16Q9HAZ2 1276 aa7.52□□□□□ -1.2
SYNE1-216ENST00000461872 FOXN1O15353 648 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 ABHD2P08910 425 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 MSH2P43246 934 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 BMT2Q1RMZ1 405 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 PALM2Q8IXS6 379 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 WDR35Q9P2L0 1181 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 MTO1Q9Y2Z2 717 aaKnown RBP7.52□□□□□ -1.21
SYNE1-216ENST00000461872 STAM2O75886 525 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 INHBAP08476 426 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 COPS2P61201 443 aa7.52□□□□□ -1.21
SYNE1-216ENST00000461872 SLC40A1Q9NP59 571 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms