RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CAMK1Q14012 370 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 EMC2Q15006 297 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 TWF2Q6IBS0 349 aaKnown RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 OTUD6AQ7L8S5 288 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 CCDC83Q8IWF9 413 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 PSPC1Q8WXF1 523 aaKnown RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 DYDC2Q96IM9 177 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 CCDC43Q96MW1 224 aaKnown RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 MRPL9Q9BYD2 267 aaKnown RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 IGFLR1Q9H665 355 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 ZSWIM4Q9H7M6 989 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 TLR9Q9NR96 1032 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 CHST12Q9NRB3 414 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 TYW1Q9NV66 732 aaKnown RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 WRAP73Q9P2S5 460 aaPredicted RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 HCSTQ9UBK5 93 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 COL4A3BPQ9Y5P4 624 aa15.6■□□□□ 0.09
USP4-206ENST00000461553 TDRD15B5MCY1 1934 aaKnown RBP15.6■□□□□ 0.09
USP4-206ENST00000461553 A0A0U1RQF3 1178 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 GRXCR2A6NFK2 248 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 TBX10O75333 385 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 CSDE1O75534 798 aaKnown RBP15.59■□□□□ 0.09
USP4-206ENST00000461553 FGF18O76093 207 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 SSTR3P32745 418 aaPredicted RBP15.59■□□□□ 0.09
USP4-206ENST00000461553 IRS1P35568 1242 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 PPM1AP35813 382 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 NDUFV1P49821 464 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 CTTNQ14247 550 aaKnown RBP15.59■□□□□ 0.09
USP4-206ENST00000461553 CTC1Q2NKJ3 1217 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 XKR9Q5GH70 373 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 CATSPER4Q7RTX7 472 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 TCP11Q8WWU5 503 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 CASD1Q96PB1 797 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 DHX33Q9H6R0 707 aaKnown RBP15.59■□□□□ 0.09
USP4-206ENST00000461553 CWH43Q9H720 699 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 BMP2KQ9NSY1 1161 aaPredicted RBP15.59■□□□□ 0.09
USP4-206ENST00000461553 RNF19AQ9NV58 838 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 RGL1Q9NZL6 768 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 PCDHA12Q9UN75 941 aa15.59■□□□□ 0.09
USP4-206ENST00000461553 FSD2A1L4K1 749 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 EOMESO95936 686 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 SKIP12755 728 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 GTF2F1P35269 517 aaKnown RBP eCLIP15.58■□□□□ 0.08
USP4-206ENST00000461553 RAB27AP51159 221 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 CLLU1OSQ5K130 101 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 ADGRD2Q7Z7M1 963 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 KSR1Q8IVT5 923 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 TPH2Q8IWU9 490 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 FAM178BQ8IXR5 827 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 HELQQ8TDG4 1101 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 RSPH1Q8WYR4 309 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 C8orf76Q96K31 380 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 ZNF558Q96NG5 402 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 MTRQ99707 1265 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 LLPHQ9BRT6 129 aaKnown RBP15.58■□□□□ 0.08
USP4-206ENST00000461553 C1QTNF1Q9BXJ1 281 aa15.58■□□□□ 0.08
USP4-206ENST00000461553 TTC12Q9H892 705 aaPredicted RBP15.58■□□□□ 0.08
USP4-206ENST00000461553 SH2B1Q9NRF2 756 aaPredicted RBP15.58■□□□□ 0.08
USP4-206ENST00000461553 ATF7P17544 494 aaPredicted RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 LTBRP36941 435 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 PHKA2P46019 1235 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 NRIP1P48552 1158 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 HMGN5P82970 282 aaKnown RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 GUCY1B3Q02153 619 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 SMAD4Q13485 552 aaKnown RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 CLUL1Q15846 466 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 C8orf34Q49A92 452 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 ZNF598Q86UK7 904 aaKnown RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 EFHBQ8N7U6 833 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 ZNF579Q8NAF0 562 aaKnown RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 MICAL1Q8TDZ2 1067 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 TMEM143Q96AN5 459 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 ZSCAN31Q96LW9 406 aaPredicted RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 EIF2AK1Q9BQI3 630 aaKnown RBP15.57■□□□□ 0.08
USP4-206ENST00000461553 AGPAT5Q9NUQ2 364 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 CD207Q9UJ71 328 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 LZTS1Q9Y250 596 aa15.57■□□□□ 0.08
USP4-206ENST00000461553 WNT7AO00755 349 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 LINC01565O15544 149 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 TXKP42681 527 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 DLX2Q07687 328 aaPredicted RBP15.56■□□□□ 0.08
USP4-206ENST00000461553 GNL2Q13823 731 aaKnown RBP15.56■□□□□ 0.08
USP4-206ENST00000461553 PLPP4Q5VZY2 271 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 PDE12Q6L8Q7 609 aaKnown RBP15.56■□□□□ 0.08
USP4-206ENST00000461553 KCNT2Q6UVM3 1135 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 LRRC55Q6ZSA7 311 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 SRGAP1Q7Z6B7 1085 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 GJD3Q8N144 294 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 FAM184AQ8NB25 1140 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 PRPF31Q8WWY3 499 aaKnown RBP15.56■□□□□ 0.08
USP4-206ENST00000461553 MRPS27Q92552 414 aaKnown RBP15.56■□□□□ 0.08
USP4-206ENST00000461553 TRAIPQ9BWF2 469 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 IFT122Q9HBG6 1241 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 ENTPD7Q9NQZ7 604 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 FAM105AQ9NUU6 356 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 PRKAG3Q9UGI9 489 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 PUF60Q9UHX1 559 aaKnown RBP15.56■□□□□ 0.08
USP4-206ENST00000461553 PCDHGC5Q9Y5F6 944 aa15.56■□□□□ 0.08
USP4-206ENST00000461553 POTEMA6NI47 508 aa15.55■□□□□ 0.08
USP4-206ENST00000461553 ASAP2O43150 1006 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms