RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MAPK7Q13164 816 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 TRIP13Q15645 432 aaPredicted RBP12.64□□□□□ -0.39
CPSF3-202ENST00000460593 VSTM1Q6UX27 236 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 SUPT20HQ8NEM7 779 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 SYT15Q9BQS2 421 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 SIX2Q9NPC8 291 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 CPSF2Q9P2I0 782 aaKnown RBP12.64□□□□□ -0.39
CPSF3-202ENST00000460593 PCDHA2Q9Y5H9 948 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 SFI1A8K8P3 1242 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 BTNL10A8MVZ5 291 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 RFC4P35249 363 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 GNAQP50148 359 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 TMEM119Q4V9L6 283 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 C6orf118Q5T5N4 469 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 C12orf60Q5U649 245 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 ZNF449Q6P9G9 518 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 ECHDC2Q86YB7 292 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 PRELID2Q8N945 189 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 HAS1Q92839 578 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 HAO1Q9UJM8 370 aa12.64□□□□□ -0.39
CPSF3-202ENST00000460593 POTEFA5A3E0 1075 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 KLHL33A6NCF5 533 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 ATMINO43313 823 aaPredicted RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 AFPP02771 609 aaKnown RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 PLA2G4BP0C869 781 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 POTEIP0CG38 1075 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 PTGIRP43119 386 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 RAB27AP51159 221 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 MXRA7P84157 204 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 ARHGAP44Q17R89 818 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 GALNT17Q6IS24 598 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 POTEGQ6S5H5 508 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 POTEEQ6S8J3 1075 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 ASRGL1Q7L266 308 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 CYP4X1Q8N118 509 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 TBC1D16Q8TBP0 767 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 BTBD6Q96KE9 485 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 CEP63Q96MT8 703 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 ATP8A2Q9NTI2 1148 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 RSPH10B2B2RC85 870 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 LRRN2O75325 713 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 RSPH10BP0C881 870 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 VPS41P49754 854 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 PSMC6P62333 389 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 CTTNQ14247 550 aaKnown RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 RNF220Q5VTB9 566 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 ZNF746Q6NUN9 644 aaPredicted RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 COL23A1Q86Y22 540 aaPredicted RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 CNBD1Q8NA66 436 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 TGS1Q96RS0 853 aaKnown RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 RPS6KC1Q96S38 1066 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 MINPP1Q9UNW1 487 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 GOLGA6L10A0A0M3HER8 536 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 HOXD13P35453 343 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 CHKAP35790 457 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 FXR2P51116 673 aaKnown RBP eCLIP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 PSMD2Q13200 908 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 DZIP1Q86YF9 867 aaKnown RBP12.63□□□□□ -0.39
CPSF3-202ENST00000460593 CEP120Q8N960 986 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 OLIG1Q8TAK6 271 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 TSC22D3Q99576 134 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 MXD3Q9BW11 206 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 MYLK2Q9H1R3 596 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 GPCPD1Q9NPB8 672 aa12.63□□□□□ -0.39
CPSF3-202ENST00000460593 HIP1RO75146 1068 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ENTPD5O75356 428 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 XRCC5P13010 732 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ERFP50548 548 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 EPHA7Q15375 998 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 SLC30A9Q6PML9 568 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 PHC3Q8NDX5 983 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 UCMAQ8WVF2 138 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 CDC42EP4Q9H3Q1 356 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 BMP2KQ9NSY1 1161 aaPredicted RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 A0A1B0GUL6 1792 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 PECAM1P16284 738 aaPredicted RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 RASA1P20936 1047 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 RFC5P40937 340 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ICA1Q05084 483 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 PABPC4Q13310 644 aaKnown RBP eCLIP12.62□□□□□ -0.394e-9■■■□□ 18.8
CPSF3-202ENST00000460593 ERFEQ4G0M1 354 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ARSHQ5FYA8 562 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 RBM26Q5T8P6 1007 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 CCDC137Q6PK04 289 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 SLC30A10Q6XR72 485 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 SFR1Q86XK3 245 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 CCDC65Q8IXS2 484 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 CCDC105Q8IYK2 499 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 SYCE1Q8N0S2 351 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 LRRC47Q8N1G4 583 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ERP27Q96DN0 273 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 PAPOLBQ9NRJ5 636 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 IRAK4Q9NWZ3 460 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 DDX25Q9UHL0 483 aaKnown RBP12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ARL2BPQ9Y2Y0 163 aa12.62□□□□□ -0.39
CPSF3-202ENST00000460593 ARAP2Q8WZ64 1704 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 DLEC1Q9Y238 1755 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 NTSR2O95665 410 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 CETPP11597 493 aa12.61□□□□□ -0.39
CPSF3-202ENST00000460593 CYP11B2P19099 503 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms