RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 DNAJC12Q9UKB3 198 aa9.6□□□□□ -0.87
HDAC3-202ENST00000459727 NFU1Q9UMS0 254 aa9.6□□□□□ -0.87
HDAC3-202ENST00000459727 STXBP5LQ9Y2K9 1186 aa9.6□□□□□ -0.87
HDAC3-202ENST00000459727 ZNF646O15015 1829 aaPredicted RBP9.6□□□□□ -0.87
HDAC3-202ENST00000459727 RPTORQ8N122 1335 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 RSPH10B2B2RC85 870 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 BHMG1C9JSJ3 638 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 EML1O00423 815 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 DDX3XO00571 662 aaKnown RBP eCLIP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 WDR46O15213 610 aaKnown RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PPIP5K2O43314 1243 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 RAD51CO43502 376 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PPP1R37O75864 691 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 KIAA0754O94854 1291 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 RSPH10BP0C881 870 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 ACTN1P12814 892 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 NR1D1P20393 614 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 HOXA13P31271 388 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 CACNB3P54284 484 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 GALCP54803 685 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 DRG2P55039 364 aaKnown RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 CORO7P57737 925 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 MCCD1P59942 119 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 GNGT1P63211 74 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 DRAP1Q14919 205 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 EZH2Q15910 746 aaKnown RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 SPDYE2Q495Y8 402 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PPP1R2P3Q6NXS1 205 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 ENOSF1Q7L5Y1 443 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 MIER3Q7Z3K6 550 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 DEFB132Q7Z7B7 95 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 NT5DC3Q86UY8 548 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 RBM46Q8TBY0 533 aaKnown RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 HDAC7Q8WUI4 952 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 CASKIN2Q8WXE0 1202 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 IFT81Q8WYA0 676 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 MS4A14Q96JA4 679 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 ZIM3Q96PE6 472 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 RPS6KC1Q96S38 1066 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PSMD1Q99460 953 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 LXNQ9BS40 222 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PAGR1Q9BTK6 254 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 WDR18Q9BV38 432 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 STRA6Q9BX79 667 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PACSIN1Q9BY11 444 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 STMN4Q9H169 189 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-202ENST00000459727 ANKEF1Q9NU02 776 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 RGL1Q9NZL6 768 aa9.59□□□□□ -0.87
HDAC3-202ENST00000459727 PSME4Q14997 1843 aa9.59□□□□□ -0.88
HDAC3-202ENST00000459727 A0A087WUV0 522 aaPredicted RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 FAM196BA6NMK8 535 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 K7ENM7 598 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 PODXLO00592 558 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 MTA2O94776 668 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 GZMAP12544 262 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 PLS3P13797 630 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 ERCC3P19447 782 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 GTF2H1P32780 548 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 USP8P40818 1118 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 CARSP49589 748 aaKnown RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 CASP4P49662 377 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 VAMP7P51809 220 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 PTENP60484 403 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 TNFAIP1Q13829 316 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 CTTNQ14247 550 aaKnown RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 ENOX2Q16206 610 aaKnown RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 AOC3Q16853 763 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 PCNX4Q63HM2 1172 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 PADI6Q6TGC4 694 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 LDHDQ86WU2 507 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 KLHL7Q8IXQ5 586 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 METTL13Q8N6R0 699 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 XXYLT1Q8NBI6 393 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 TSEN2Q8NCE0 465 aaKnown RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 AGBL3Q8NEM8 1001 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 BCAS4Q8TDM0 211 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 PIGOQ8TEQ8 1089 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 MAIP1Q8WWC4 291 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 P2RX7Q99572 595 aaKnown RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 SYT11Q9BT88 431 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 UNC45AQ9H3U1 944 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 CNOT10Q9H9A5 744 aaKnown RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 ZNF70Q9UC06 446 aaPredicted RBP9.58□□□□□ -0.88
HDAC3-202ENST00000459727 RSPH14Q9UHP6 348 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 MTUS1Q9ULD2 1270 aa9.58□□□□□ -0.88
HDAC3-202ENST00000459727 SLX4Q8IY92 1834 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 A0A1W2PRG0 241 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 NDUFAB1O14561 156 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 KIAA0391O15091 583 aaKnown RBP9.57□□□□□ -0.88
HDAC3-202ENST00000459727 CLIC2O15247 247 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 MAFGO15525 162 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 CHMP2AO43633 222 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 HIP1RO75146 1068 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 ZC3H11AO75152 810 aaKnown RBP eCLIP9.57□□□□□ -0.88
HDAC3-202ENST00000459727 APBA3O96018 575 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 CPP00450 1065 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 NMT1P30419 496 aaKnown RBP9.57□□□□□ -0.88
HDAC3-202ENST00000459727 CHRNA3P32297 505 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 MAN1A1P33908 653 aa9.57□□□□□ -0.88
HDAC3-202ENST00000459727 CTNNA1P35221 906 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms