RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SPATA18Q8TC71 538 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PPP1R14AQ96A00 147 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TRMT2BQ96GJ1 504 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 OSGEPQ9NPF4 335 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TCP11L1Q9NUJ3 509 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TUBA8Q9NY65 449 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 REV1Q9UBZ9 1251 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ZC3H7BQ9UGR2 993 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 FAM184BQ9ULE4 1060 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PNMA8BQ9ULN7 279 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 SAMM50Q9Y512 469 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 EPN1Q9Y6I3 576 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 USP19O94966 1318 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC21BQ7Z4L5 1316 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MEIS3P2A8K0S8 358 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PLSCR1O15162 318 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ATXN7O15265 892 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 KCNJ13O60928 360 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 UPP2O95045 317 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 AGR2O95994 175 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MAPTP10636 758 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MTHFD1P11586 935 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 CD33P20138 364 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ENDOUP21128 410 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 CDC25BP30305 580 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MTHFRP42898 656 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ID4P47928 161 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PPM1FP49593 454 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TMPRSS15P98073 1019 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TMEM62Q0P6H9 643 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PIN1Q13526 163 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 BECN1Q14457 450 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PUM3Q15397 648 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 RILPL1Q5EBL4 403 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 SAMD5Q5TGI4 173 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 NAA16Q6N069 864 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 DSTYKQ6XUX3 929 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF804AQ7Z570 1209 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 RSPH3Q86UC2 560 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PDZD3Q86UT5 571 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 DZIP1LQ8IYY4 767 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MSANTD4Q8NCY6 345 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 RASSF8Q8NHQ8 419 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 B4GALNT2Q8NHY0 566 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PARD3BQ8TEW8 1205 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF669Q96BR6 464 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TIFAQ96CG3 184 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PLPPR2Q96GM1 343 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TTPALQ9BTX7 342 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF700Q9H0M5 742 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 CYP4F11Q9HBI6 524 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 GPR108Q9NPR9 543 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 A1CFQ9NQ94 594 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 RGL1Q9NZL6 768 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 LAMP5Q9UJQ1 280 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 PCDHA4Q9UN74 947 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TIMM22Q9Y584 194 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC21AQ8NDW8 1320 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 A0A1W2PP64 1363 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 ANKRD36BQ8N2N9 1353 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 MON2Q7Z3U7 1717 aa5.29□□□□□ -1.56
CCDC88A-209ENST00000456975 LOC102724428A0A0B4J2F2 783 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 FAM170AA1A519 330 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC22A31A6NKX4 558 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TTLL8A6PVC2 850 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PLD2O14939 933 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TBX1O43435 398 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 RFPL3O75679 317 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 APBB3O95704 486 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 IL33O95760 270 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 F11P03951 625 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TP53P04637 393 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NME1P15531 152 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 FERP16591 822 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PRKAR2BP31323 418 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 ELF1P32519 619 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SIK1P57059 783 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 LRRC74AQ0VAA2 488 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 GRM1Q13255 1194 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TCIRG1Q13488 830 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 STAT4Q14765 748 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SKOR2Q2VWA4 1001 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 VWA3BQ502W6 1294 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TDRD10Q5VZ19 366 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 POTEGQ6S5H5 508 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 TRIML2Q8N7C3 387 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SPERTQ8NA61 448 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 GALNT6Q8NCL4 622 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 BSNDQ8WZ55 320 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 ATP6V1E2Q96A05 226 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 RUFY1Q96T51 708 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NACAP1Q9BZK3 213 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 LACRTQ9GZZ8 138 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 CDH19Q9H159 772 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 NRDE2Q9H7Z3 1164 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 STARD7Q9NQZ5 370 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 PAPOLBQ9NRJ5 636 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 SAGE1Q9NXZ1 904 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF180Q9UJW8 692 aa5.28□□□□□ -1.56
CCDC88A-209ENST00000456975 IPPQ9Y573 584 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms