RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 AATFQ9NY61 560 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PCDHB8Q9UN66 801 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 STK38LQ9Y2H1 464 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CACNA1EQ15878 2313 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 KIF1AQ12756 1690 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TM9SF1O15321 606 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 NDUFA10O95299 355 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 HIC1Q14526 733 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 RRAGAQ7L523 313 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ZNF654Q8IZM8 581 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 RBM42Q9BTD8 480 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 BEGAINQ9BUH8 593 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 RCOR1Q9UKL0 485 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SLIT1O75093 1534 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 MLH3Q9UHC1 1453 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CES2O00748 559 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 EIF3HO15372 352 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TBC1D4O60343 1298 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 GCNT3O95395 438 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ACADVLP49748 655 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CLCN6P51797 869 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TRIM71Q2Q1W2 868 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 DDX42Q86XP3 938 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 LARP4BQ92615 738 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CLMNQ96JQ2 1002 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 NT5C1BQ96P26 610 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TRAPPC9Q96Q05 1148 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ESYT2A0FGR8 921 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 U2AF2P26368 475 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SGO2Q562F6 1265 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 AS3MTQ9HBK9 375 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TAF4O00268 1085 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SLC27A2O14975 620 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 MT-ND3P03897 115 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CYP7A1P22680 504 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 AARSP49588 968 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 LIG3P49916 1009 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 UAP1Q16222 522 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 WLSQ5T9L3 541 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 DKK3Q9UBP4 350 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 MARK3P27448 753 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 BCAP31P51572 246 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SNAP25P60880 206 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 FAM160B1Q5W0V3 765 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TRAPPC11Q7Z392 1133 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 NANOGNBQ7Z5D8 188 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SRLQ86TD4 932 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TTC8Q8TAM2 541 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PIK3R5Q8WYR1 880 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 STAMQ92783 540 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SLC10A4Q96EP9 437 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ZFP69BQ9UJL9 534 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TP53BP1Q12888 1972 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PRR23D1E9PI22 279 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 P4HA2O15460 535 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PRR23D2P0DMB1 279 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 MAPK11Q15759 364 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TOGARAM2Q6ZUX3 1019 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 FKBP9P1Q75LS8 142 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 BLOC1S5Q8TDH9 187 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 RAD21L1Q9H4I0 556 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 STN1Q9H668 368 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ATP8A1Q9Y2Q0 1164 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 VAMP4O75379 141 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 NPEPPSP55786 919 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 COPS2P61201 443 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 SSH3Q8TE77 659 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PIGUQ9H490 435 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 L3MBTL1Q9Y468 752 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ACACAQ13085 2346 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 DISP3Q9P2K9 1392 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CHL1O00533 1208 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 BACH1O14867 736 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CTIFO43310 598 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 AFPP02771 609 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 KCNQ4P56696 695 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 THOC5Q13769 683 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 RASA3Q14644 834 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 THAP11Q96EK4 314 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 DDX50Q9BQ39 737 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PANK2Q9BZ23 570 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 MYO3AQ8NEV4 1616 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 FKBP6O75344 327 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 RGS2P41220 211 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 HIRAP54198 1017 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 CWF19L2Q2TBE0 894 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 DDHD1Q8NEL9 900 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 AIPL1Q9NZN9 384 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PHF8Q9UPP1 1060 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 C15orf38-AP3S2A0A0A6YYH1 394 aa5.53□□□□□ -1.52
CSMD3-204ENST00000455883 ERVV-2B6SEH9 535 aa5.53□□□□□ -1.52
CSMD3-204ENST00000455883 SKIV2L2P42285 1042 aaKnown RBP5.53□□□□□ -1.52
CSMD3-204ENST00000455883 SKOR1P84550 965 aa5.53□□□□□ -1.52
CSMD3-204ENST00000455883 RBM20Q5T481 1227 aaKnown RBP5.53□□□□□ -1.52
CSMD3-204ENST00000455883 HIBCHQ6NVY1 386 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-204ENST00000455883 ARPINQ7Z6K5 226 aa5.53□□□□□ -1.52
CSMD3-204ENST00000455883 ZNF677Q86XU0 584 aa5.53□□□□□ -1.52
CSMD3-204ENST00000455883 BLIDQ8IZY5 108 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms