RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PXMP2Q9NR77 195 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 FAN1Q9Y2M0 1017 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 CTDP1Q9Y5B0 961 aaPredicted RBP16.4■□□□□ 0.22
LDLR-202ENST00000455727 WDR81Q562E7 1941 aa16.4■□□□□ 0.22
LDLR-202ENST00000455727 EGFRP00533 1210 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 EIF2AK2P19525 551 aaKnown RBP16.39■□□□□ 0.21
LDLR-202ENST00000455727 NOP2P46087 812 aaKnown RBP16.39■□□□□ 0.21
LDLR-202ENST00000455727 EPHB4P54760 987 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 PSMC5P62195 406 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 KRT76Q01546 638 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 MTMR2Q13614 643 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 RNF207Q6ZRF8 634 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 SYCE1Q8N0S2 351 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 RDM1Q8NG50 284 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 TRERF1Q96PN7 1200 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 RMDN3Q96TC7 470 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 RPAP3Q9H6T3 665 aaPredicted RBP16.39■□□□□ 0.21
LDLR-202ENST00000455727 HOMER2Q9NSB8 354 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 ANKEF1Q9NU02 776 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 TMEM59LQ9UK28 342 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 SCAF8Q9UPN6 1271 aaKnown RBP16.39■□□□□ 0.21
LDLR-202ENST00000455727 ASTN2O75129 1339 aaPredicted RBP16.39■□□□□ 0.21
LDLR-202ENST00000455727 TRIM49P0CI25 452 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 TRIM49CP0CI26 452 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 SPP2Q13103 211 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 IFT20Q8IY31 132 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 USP38Q8NB14 1042 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 ACTRT1Q8TDG2 376 aa16.39■□□□□ 0.21
LDLR-202ENST00000455727 WDR64B1ANS9 1081 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 VWA5AO00534 786 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 PMM2O15305 246 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 CLSTN1O94985 981 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 GYS2P54840 703 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 SLC7A5Q01650 507 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 CETN1Q12798 172 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 NNTQ13423 1086 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 DEFB132Q7Z7B7 95 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 GSPT2Q8IYD1 628 aaKnown RBP16.38■□□□□ 0.21
LDLR-202ENST00000455727 LNX1Q8TBB1 728 aaPredicted RBP16.38■□□□□ 0.21
LDLR-202ENST00000455727 CAVIN3Q969G5 261 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 GDF3Q9NR23 364 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 SUCLA2Q9P2R7 463 aaPredicted RBP16.38■□□□□ 0.21
LDLR-202ENST00000455727 PACSIN2Q9UNF0 486 aaPredicted RBP16.38■□□□□ 0.21
LDLR-202ENST00000455727 RLFQ13129 1914 aa16.38■□□□□ 0.21
LDLR-202ENST00000455727 NFKBIEO00221 500 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 MAFGO15525 162 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 VAMP7P51809 220 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 NCKAP1LP55160 1127 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 DGKZQ13574 1117 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 KIF22Q14807 665 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 DCAF15Q66K64 600 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 MAEAQ7L5Y9 396 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 HAUS6Q7Z4H7 955 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 XXYLT1Q8NBI6 393 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 U2AF1L4Q8WU68 220 aaKnown RBP16.37■□□□□ 0.21
LDLR-202ENST00000455727 CCDC43Q96MW1 224 aaKnown RBP16.37■□□□□ 0.21
LDLR-202ENST00000455727 SENP7Q9BQF6 1050 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 ZNF112Q9UJU3 913 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 USP20Q9Y2K6 914 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 KCNK3O14649 394 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 TMEM253P0C7T8 217 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 ZBTB48P10074 688 aaPredicted RBP16.37■□□□□ 0.21
LDLR-202ENST00000455727 MYCLP12524 364 aaPredicted RBP16.37■□□□□ 0.21
LDLR-202ENST00000455727 GALCP54803 685 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 BACE1P56817 501 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 PLS1Q14651 629 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 ARHGEF16Q5VV41 709 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 PHLDB3Q6NSJ2 640 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 AS3MTQ9HBK9 375 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 HACL1Q9UJ83 578 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 STXBP5LQ9Y2K9 1186 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 NCANO14594 1321 aa16.37■□□□□ 0.21
LDLR-202ENST00000455727 ATP9AO75110 1047 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 OAZ1P54368 228 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 TNNC1P63316 161 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 ZNF746Q6NUN9 644 aaPredicted RBP16.36■□□□□ 0.21
LDLR-202ENST00000455727 SND1Q7KZF4 910 aaKnown RBP eCLIP16.36■□□□□ 0.212e-7■■■□□ 16.9
LDLR-202ENST00000455727 VSIG10LQ86VR7 867 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 RDH13Q8NBN7 331 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 HVCN1Q96D96 273 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 CALR3Q96L12 384 aaKnown RBP16.36■□□□□ 0.21
LDLR-202ENST00000455727 TCEAL9Q9UHQ7 104 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 COL11A1P12107 1806 aaPredicted RBP16.36■□□□□ 0.21
LDLR-202ENST00000455727 EMSYQ7Z589 1322 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 AGPSO00116 658 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 CCNE2O96020 404 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 UGCGQ16739 394 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 PEX26Q7Z412 305 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 GLYCTKQ8IVS8 523 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 MICALL2Q8IY33 904 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 SCYL3Q8IZE3 742 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 SCFD2Q8WU76 684 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 GPRASP2Q96D09 838 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 GDAP1L1Q96MZ0 367 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 HSPBP1Q9NZL4 362 aa16.36■□□□□ 0.21
LDLR-202ENST00000455727 LTBP3Q9NS15 1303 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 GOLGA6BA6NDN3 693 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 BACH1O14867 736 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 RNF40O75150 1001 aa16.35■□□□□ 0.21
LDLR-202ENST00000455727 GLI1P08151 1106 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms