RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 NOP58Q9Y2X3 529 aaKnown RBP5.53□□□□□ -1.52
USP40-209ENST00000452724 hCG_2014768A0A024R1R8 64 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 ARHGAP6O43182 974 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 RAB11FIP3O75154 756 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 RAD17O75943 681 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 APEX1P27695 318 aaKnown RBP5.52□□□□□ -1.53
USP40-209ENST00000452724 RPS19P39019 145 aaKnown RBP5.52□□□□□ -1.53
USP40-209ENST00000452724 RGS3P49796 1198 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 MAP3K12Q12852 859 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 R3HDM1Q15032 1099 aaKnown RBP5.52□□□□□ -1.53
USP40-209ENST00000452724 RNF151Q2KHN1 245 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 SPDYAQ5MJ70 313 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 PRAMEF9Q5VWM5 478 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 KANK2Q63ZY3 851 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 IQSEC1Q6DN90 963 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 TIGD7Q6NT04 549 aaPredicted RBP5.52□□□□□ -1.53
USP40-209ENST00000452724 USP30Q70CQ3 517 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 POLNQ7Z5Q5 900 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 RASSF3Q86WH2 238 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 RTKN2Q8IZC4 609 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 PRPF38AQ8NAV1 312 aaKnown RBP5.52□□□□□ -1.53
USP40-209ENST00000452724 CLRN3Q8NCR9 226 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 EDAQ92838 391 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 FAM89AQ96GI7 184 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 POFUT1Q9H488 388 aa5.52□□□□□ -1.53
USP40-209ENST00000452724 USP36Q9P275 1121 aaKnown RBP5.52□□□□□ -1.53
USP40-209ENST00000452724 A0A0G2JNJ9 132 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 LCHNA4D1U4 455 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 CYR61O00622 381 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 KDM1AO60341 852 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 NFYCQ13952 458 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 MYBPC3Q14896 1274 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 EIF4HQ15056 248 aaKnown RBP5.51□□□□□ -1.53
USP40-209ENST00000452724 FRMD7Q6ZUT3 714 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 FUKQ8N0W3 1084 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 COG1Q8WTW3 980 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 ZNF496Q96IT1 587 aaPredicted RBP5.51□□□□□ -1.53
USP40-209ENST00000452724 OR14A2Q96R54 314 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 MYL10Q9BUA6 226 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 ZNF747Q9BV97 191 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 Q9UFV3 132 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 NOC2LQ9Y3T9 749 aaKnown RBP5.51□□□□□ -1.53
USP40-209ENST00000452724 PHLDB1Q86UU1 1377 aa5.51□□□□□ -1.53
USP40-209ENST00000452724 PRPF6O94906 941 aaKnown RBP5.5□□□□□ -1.53
USP40-209ENST00000452724 APOL3O95236 402 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 AMHP03971 560 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 ANAPC15P60006 121 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 CD83Q01151 205 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 ADCY2Q08462 1091 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 AGBL4Q5VU57 503 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 GRAMD4Q6IC98 578 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 ESPNLQ6ZVH7 1005 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 NECAB2Q7Z6G3 386 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 DPYSL5Q9BPU6 564 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 ZNF341Q9BYN7 854 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 OR10A2Q9H208 303 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 SLC5A4Q9NY91 659 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 CDC42EP3Q9UKI2 254 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 SLC30A1Q9Y6M5 507 aa5.5□□□□□ -1.53
USP40-209ENST00000452724 ALG1L2C9J202 215 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 MAFO75444 373 aaPredicted RBP5.49□□□□□ -1.53
USP40-209ENST00000452724 PRKD3O94806 890 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 MRE11P49959 708 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 GUCY2FP51841 1108 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 BCAR1P56945 870 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 EVA1CP58658 441 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 IGBP1P78318 339 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 FAPQ12884 760 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 MOGSQ13724 837 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 FAM50AQ14320 339 aaKnown RBP5.49□□□□□ -1.53
USP40-209ENST00000452724 NOLC1Q14978 699 aaKnown RBP eCLIP5.49□□□□□ -1.53
USP40-209ENST00000452724 PCOLCEQ15113 449 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 NRN1LQ496H8 165 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 TMEM200BQ69YZ2 307 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 KIAA1841Q6NSI8 718 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 KANSL1Q7Z3B3 1105 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 CXorf67Q86X51 503 aaPredicted RBP5.49□□□□□ -1.53
USP40-209ENST00000452724 RPGRQ92834 1020 aaKnown RBP5.49□□□□□ -1.53
USP40-209ENST00000452724 FERMT2Q96AC1 680 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 SORCS2Q96PQ0 1159 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 KIAA1683Q9H0B3 1180 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 PUS7LQ9H0K6 701 aaKnown RBP5.49□□□□□ -1.53
USP40-209ENST00000452724 NELFAQ9H3P2 528 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 VTA1Q9NP79 307 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 TOPORSQ9NS56 1045 aaPredicted RBP5.49□□□□□ -1.53
USP40-209ENST00000452724 FAM184BQ9ULE4 1060 aa5.49□□□□□ -1.53
USP40-209ENST00000452724 ELL2O00472 640 aaPredicted RBP5.48□□□□□ -1.53
USP40-209ENST00000452724 ACO1P21399 889 aaKnown RBP5.48□□□□□ -1.53
USP40-209ENST00000452724 HMGA2P52926 109 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 HHEXQ03014 270 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 TRIM68Q6AZZ1 485 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 UNQ6494/PRO21346Q6UXR6 183 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 RPUSD2Q8IZ73 545 aaKnown RBP5.48□□□□□ -1.53
USP40-209ENST00000452724 PLA2G12BQ9BX93 195 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 KCMF1Q9P0J7 381 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 KCNG1Q9UIX4 513 aa5.48□□□□□ -1.53
USP40-209ENST00000452724 ST20-MTHFSA0A0A6YYL1 179 aa5.47□□□□□ -1.53
USP40-209ENST00000452724 ACVRL1P37023 503 aa5.47□□□□□ -1.53
USP40-209ENST00000452724 SESN2P58004 480 aaPredicted RBP5.47□□□□□ -1.53
USP40-209ENST00000452724 PDCD1Q15116 288 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms