RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 NOVA2Q9UNW9 492 aaKnown RBP7.81□□□□□ -1.16
COL28A1-202ENST00000430711 CYP3A7-CYP3A51PA0A087WV96 503 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 TMEM110-MUSTN1A8MSY1 372 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PGRMC1O00264 195 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CAND2O75155 1236 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 FGFR1OPO95684 399 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CREB1P16220 341 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PLCG2P16885 1265 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CYP3A7P24462 503 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 RPA1P27694 616 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 INPP5BP32019 993 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CTNNA1P35221 906 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CRKP46108 304 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 IFI35P80217 286 aaPredicted RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PRPF4BQ13523 1007 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 DRAP1Q14919 205 aaPredicted RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 C6orf89Q6UWU4 347 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ZDHHC24Q6UX98 284 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PEX26Q7Z412 305 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 FAM228AQ86W67 206 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CD302Q8IX05 232 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 DHX37Q8IY37 1157 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 DAW1Q8N136 415 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 RAPGEF5Q92565 580 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CYFIP2Q96F07 1278 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 HES6Q96HZ4 224 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 GLIS2Q9BZE0 524 aaPredicted RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ADAM7Q9H2U9 754 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PCIF1Q9H4Z3 704 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PLCB1Q9NQ66 1216 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 DDX20Q9UHI6 824 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PNMA2Q9UL42 364 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ATP8A1Q9Y2Q0 1164 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 TELO2Q9Y4R8 837 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 KDM3AQ9Y4C1 1321 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 SHTN1A0MZ66 631 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 hCG_1984214I3L0E3 225 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 FOXN3O00409 490 aaPredicted RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 STK25O00506 426 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 SLITRK3O94933 977 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ARP10275 920 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PRKCIP41743 596 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PPATQ06203 517 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 SPP2Q13103 211 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ZYXQ15942 572 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 CCDC38Q502W7 563 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 GLE1Q53GS7 698 aaKnown RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 FAM182AQ5T1J6 154 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 MSL1Q68DK7 614 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 SCARA3Q6AZY7 606 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PPP1R18Q6NYC8 613 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PHLDB2Q86SQ0 1253 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 TPH2Q8IWU9 490 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ZNF713Q8N859 430 aaPredicted RBP7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ACTRT1Q8TDG2 376 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PWWP2AQ96N64 755 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 PCDHB18PQ96TA0 734 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 HERPUD2Q9BSE4 406 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 TXLNGYQ9BZA5 131 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 NT5C3AQ9H0P0 336 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 ZDHHC18Q9NUE0 388 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 FBXO28Q9NVF7 368 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 GGT7Q9UJ14 662 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 DNAJC12Q9UKB3 198 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 SNX24Q9Y343 169 aa7.8□□□□□ -1.16
COL28A1-202ENST00000430711 MEFVO15553 781 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 GH2P01242 217 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 HOXA10P31260 410 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 SREBF1P36956 1147 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 SLCO1A2P46721 670 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 KCNJ1P48048 391 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 ICA1Q05084 483 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 ACTN3Q08043 901 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 PPP3CAQ08209 521 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 IKQ13123 557 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 CERKLQ49MI3 558 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 C2CD6Q53TS8 623 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 C1orf220Q5T0J3 134 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 RNF187Q5TA31 235 aaPredicted RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 CCDC174Q6PII3 467 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 C1orf186Q6ZWK4 172 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 FRMD5Q7Z6J6 570 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 IFNL1Q8IU54 200 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 CCDC13Q8IYE1 715 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 CNPY4Q8N129 248 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 RASGEF1CQ8N431 466 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 PRPF38AQ8NAV1 312 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 IL31RAQ8NI17 732 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 LMO3Q8TAP4 145 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 FBXO25Q8TCJ0 367 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TAF4BQ92750 862 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 IQCDQ96DY2 449 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 HOOK2Q96ED9 719 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 RBM17Q96I25 401 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 CRAMP1Q96RY5 1269 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TRIM7Q9C029 511 aa7.79□□□□□ -1.16
COL28A1-202ENST00000430711 TDRD3Q9H7E2 651 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 SEPT11Q9NVA2 429 aaKnown RBP7.79□□□□□ -1.16
COL28A1-202ENST00000430711 USP20Q9Y2K6 914 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms