RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 RHOT2Q8IXI1 618 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 TMEM35BQ8NCS4 154 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 FBXO40Q9UH90 709 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 UBA6A0AVT1 1052 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 TOGARAM2Q6ZUX3 1019 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 CCNYL1Q8N7R7 359 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 PARD6BQ9BYG5 372 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NEUROG2Q9H2A3 272 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 ANGPTL2Q9UKU9 493 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 CD2BP2O95400 341 aaKnown RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NR1D1P20393 614 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 SH3BGRP55822 239 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 SPP2Q13103 211 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NUGGCQ68CJ6 796 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 MARCH10Q8NA82 808 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 NSUN6Q8TEA1 469 aaKnown RBP16.43■□□□□ 0.22
PTPRF-206ENST00000429895 SAAL1Q96ER3 474 aa16.43■□□□□ 0.22
PTPRF-206ENST00000429895 PRPF4O43172 522 aaKnown RBP eCLIP16.42■□□□□ 0.221e-6■■■■□ 22.4
PTPRF-206ENST00000429895 KRT37O76014 449 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 GAS2L3Q86XJ1 694 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 TMEM47Q9BQJ4 181 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 PLAAQ9Y263 795 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 RESTQ13127 1097 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 MCPH1Q8NEM0 835 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 SCG3Q8WXD2 468 aaKnown RBP16.42■□□□□ 0.22
PTPRF-206ENST00000429895 TUBB6Q9BUF5 446 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 SH3GLB2Q9NR46 395 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 DFFAO00273 331 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 ATP1A3P13637 1013 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 C6orf118Q5T5N4 469 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 MFSD14CQ5VZR4 134 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 KDELC2Q7Z4H8 507 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 TEKT4Q8WW24 435 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 RCOR1Q9UKL0 485 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 IGSF1Q8N6C5 1336 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 IPO5O00410 1097 aaKnown RBP16.42■□□□□ 0.22
PTPRF-206ENST00000429895 SRGAP2O75044 1071 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 OCM2P0CE71 109 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 OCMP0CE72 109 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-206ENST00000429895 GFPT1Q06210 699 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-206ENST00000429895 XXYLT1Q8NBI6 393 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 CASS4Q9NQ75 786 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 FARP1Q9Y4F1 1045 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-206ENST00000429895 POTEB3A0JP26 581 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 POTECB2RU33 542 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 THEMIS2Q5TEJ8 643 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 TBC1D9BQ66K14 1250 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 POTEBQ6S5H4 581 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 RAD54LQ92698 747 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 RBM41Q96IZ5 413 aaKnown RBP16.42■□□□□ 0.22
PTPRF-206ENST00000429895 RNF14Q9UBS8 474 aa16.42■□□□□ 0.22
PTPRF-206ENST00000429895 PIK3R2O00459 728 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 LCP1P13796 627 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 COPS2P61201 443 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 UNC13DQ70J99 1090 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 YAF2Q8IY57 180 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 TTC8Q8TAM2 541 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 DNAJC6O75061 913 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 TBC1D10CQ8IV04 446 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ELAC2Q9BQ52 826 aaKnown RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 TRPC7Q9HCX4 862 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 MAPK13O15264 365 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 TMCC1O94876 653 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 SYT2Q8N9I0 419 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 TRPV6Q9H1D0 765 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 DONSONQ9NYP3 566 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 PYGLP06737 847 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 SDC4P31431 198 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ADCY2Q08462 1091 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ZC3H12BQ5HYM0 836 aaKnown RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ZNF746Q6NUN9 644 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 NUP85Q9BW27 656 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 BLVRAP53004 296 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 PSMC1P62191 440 aaKnown RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ZNF211Q13398 564 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ARL6IP4Q66PJ3 421 aaKnown RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 STRBPQ96SI9 672 aaKnown RBP16.41■□□□□ 0.22
PTPRF-206ENST00000429895 BRIP1Q9BX63 1249 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 KDM5DQ9BY66 1539 aa16.41■□□□□ 0.22
PTPRF-206ENST00000429895 ZRANB2O95218 330 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTPRF-206ENST00000429895 HOXD10P28358 340 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 TTC23LQ6PF05 361 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 SLC26A7Q8TE54 656 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 TRIM55Q9BYV6 548 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 A8MXQ7 604 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 FCER1AP12319 257 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 GNA15P30679 374 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 COASYQ13057 564 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 FAM47EQ6ZV65 393 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 LIFRP42702 1097 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 GPC5P78333 572 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 ACAD11Q709F0 780 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 CYB5R4Q7L1T6 521 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 DDX53Q86TM3 631 aaKnown RBP16.4■□□□□ 0.22
PTPRF-206ENST00000429895 NRBF2Q96F24 287 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 CEP95Q96GE4 821 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 ACAP3Q96P50 834 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 PANX2Q96RD6 677 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 PITPNM3Q9BZ71 974 aa16.4■□□□□ 0.22
PTPRF-206ENST00000429895 ABCB6Q9NP58 842 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms