RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 ANKRD63C9JTQ0 380 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 MEIS2O14770 477 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 TRAPPC3O43617 180 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 DLATP10515 647 aaKnown RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 JAMLQ86YT9 394 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 CPXCR1Q8N123 301 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 DDX23Q9BUQ8 820 aaKnown RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 VCPKMTQ9H867 229 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 DDX60Q8IY21 1712 aaKnown RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 H0YGN5 161 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 ATP2B4P23634 1241 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 SOX5P35711 763 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 PSMC2P35998 433 aaKnown RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 ECE1P42892 770 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 RINT1Q6NUQ1 792 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 ZNF572Q7Z3I7 529 aaPredicted RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 PARP9Q8IXQ6 854 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 RPUSD2Q8IZ73 545 aaKnown RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 TPX2Q9ULW0 747 aaKnown RBP13.49□□□□□ -0.25
CDH3-202ENST00000429102 NFS1Q9Y697 457 aa13.49□□□□□ -0.25
CDH3-202ENST00000429102 CLRN2A0PK11 232 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 TGFB1I1O43294 461 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 MYL7Q01449 175 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 GPATCH4Q5T3I0 446 aaKnown RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 FAM47EQ6ZV65 393 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 NEK9Q8TD19 979 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 RNF25Q96BH1 459 aaPredicted RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 XPO6Q96QU8 1125 aaKnown RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 AMNQ9BXJ7 453 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 TDRD3Q9H7E2 651 aaKnown RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 TYW1Q9NV66 732 aaKnown RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 USTQ9Y2C2 406 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 CASZ1Q86V15 1759 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 K7ENM7 598 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 GAS7O60861 476 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 CPP00450 1065 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 PEX19P40855 299 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 FMO5P49326 533 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 CLNS1AP54105 237 aaKnown RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 FRMD5Q7Z6J6 570 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 KCNV2Q8TDN2 545 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 PRCCQ92733 491 aaPredicted RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 CHMP6Q96FZ7 201 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 KIFC3Q9BVG8 833 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 INTS2Q9H0H0 1204 aaKnown RBP13.48□□□□□ -0.25
CDH3-202ENST00000429102 SAMD15Q9P1V8 674 aa13.48□□□□□ -0.25
CDH3-202ENST00000429102 CYP26A1O43174 497 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 CCDC172P0C7W6 258 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 KRT5P13647 590 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 COMTP21964 271 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 ERFP50548 548 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 LMBRD2Q68DH5 695 aaPredicted RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 PHLDB3Q6NSJ2 640 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 CCDC137Q6PK04 289 aaKnown RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 CCDC50Q8IVM0 306 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 SYCE1Q8N0S2 351 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 CCDC197Q8NCU1 140 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 ACTRT1Q8TDG2 376 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 SYN2Q92777 582 aaPredicted RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 SAAL1Q96ER3 474 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 RBM17Q96I25 401 aaKnown RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 SIX2Q9NPC8 291 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 SLC12A6Q9UHW9 1150 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 TRIM33Q9UPN9 1127 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 EMSYQ7Z589 1322 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 ITGB4P16144 1822 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 FERP16591 822 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 RPL21P46778 160 aaKnown RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 ANKRD20A8PQ5CZ79 823 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 KIAA1755Q5JYT7 1200 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 NUGGCQ68CJ6 796 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 MIGA2Q7L4E1 593 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 FUKQ8N0W3 1084 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 SYT2Q8N9I0 419 aaPredicted RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 ERP44Q9BS26 406 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 CDCA7Q9BWT1 371 aaPredicted RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 CEP83Q9Y592 693 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 TCP10L2B9ZVM9 353 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 CHUKO15111 745 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 CLDN3O15551 220 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 MYO1EQ12965 1108 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 ACCSLQ4AC99 568 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 SUGP1Q8IWZ8 645 aaKnown RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 SLFN12Q8IYM2 578 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 RAB17Q9H0T7 212 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 GPRC5CQ9NQ84 441 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 ABCF3Q9NUQ8 709 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 FGFR1OP2Q9NVK5 253 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 KLHL11Q9NVR0 708 aa13.47□□□□□ -0.25
CDH3-202ENST00000429102 BZW2Q9Y6E2 419 aaKnown RBP13.47□□□□□ -0.25
CDH3-202ENST00000429102 NDUFB10O96000 172 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 GCFC2P16383 781 aaKnown RBP13.46□□□□□ -0.25
CDH3-202ENST00000429102 MTMR3Q13615 1198 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 CYP4F22Q6NT55 531 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 ARHGEF19Q8IW93 802 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 TEKT1Q969V4 418 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 CBWD1Q9BRT8 395 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 PARVGQ9HBI0 331 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 BCORQ6W2J9 1755 aa13.46□□□□□ -0.25
CDH3-202ENST00000429102 ARHGEF35A5YM69 484 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms