RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PLCB3Q01970 1234 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 PIK3AP1Q6ZUJ8 805 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 ANO5Q75V66 913 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 ZNF598Q86UK7 904 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 EXOC8Q8IYI6 725 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 RNF169Q8NCN4 708 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 SLC7A3Q8WY07 619 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 MRPS27Q92552 414 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 TRAIPQ9BWF2 469 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 INO80BQ9C086 356 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 TLE6Q9H808 572 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 BRMS1Q9HCU9 246 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 PPP4R2Q9NY27 417 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 CLEC1BQ9P126 229 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 SUCLA2Q9P2R7 463 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 ORC3Q9UBD5 711 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 PUF60Q9UHX1 559 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 PCDHGC5Q9Y5F6 944 aa12.96□□□□□ -0.33
SQSTM1-203ENST00000422245 EML1O00423 815 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 CCNT1O60563 726 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 GLP2RO95838 553 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 P4HBP07237 508 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 ATF7P17544 494 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 FGFR4P22455 802 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 DUSP6Q16828 381 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 CLLU1OSQ5K130 101 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 ERICH6BQ5W0A0 696 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 PLA2G4FQ68DD2 849 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 KCNT2Q6UVM3 1135 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 RBM23Q86U06 439 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 RHPN2Q8IUC4 686 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 FAM122AQ96E09 287 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 NGRNQ9NPE2 291 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 ENTPD7Q9NQZ7 604 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 CYP26B1Q9NR63 512 aa12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 BARX2Q9UMQ3 279 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-203ENST00000422245 A0A087WZ62 844 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 CARNS1A5YM72 827 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 MARCH6O60337 910 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 CTDNEP1O95476 244 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 SKIP12755 728 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 KRT2P35908 639 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 RFC5P40937 340 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 RAB27AP51159 221 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 AK2P54819 239 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 ERVFC1P60507 584 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 KRT17Q04695 432 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 PLPP4Q5VZY2 271 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 TWF2Q6IBS0 349 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 LRRC55Q6ZSA7 311 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 SLFN12Q8IYM2 578 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 OXER1Q8TDS5 423 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 GTF3C6Q969F1 213 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 NLRP4Q96MN2 994 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 TCF25Q9BQ70 676 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 SH2D3AQ9BRG2 576 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 FDXACB1Q9BRP7 624 aaPredicted RBP12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 LXNQ9BS40 222 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 SPG21Q9NZD8 308 aa12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 PIN4Q9Y237 131 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-203ENST00000422245 GAS2O43903 313 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 CSDE1O75534 798 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 PHKA2P46019 1235 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 POLGP54098 1239 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 EPHA7Q15375 998 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 GLB1LQ6UWU2 654 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 CATSPER4Q7RTX7 472 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 C4orf19Q8IY42 314 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 SLC39A11Q8N1S5 342 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 VN1R2Q8NFZ6 395 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 HELQQ8TDG4 1101 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 PSPC1Q8WXF1 523 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 HAS1Q92839 578 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 CEP170P1Q96L14 293 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 GJB4Q9NTQ9 266 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 USP15Q9Y4E8 981 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 COL4A3BPQ9Y5P4 624 aa12.93□□□□□ -0.34
SQSTM1-203ENST00000422245 PER2O15055 1255 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 BAG4O95429 457 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 YWHABP31946 246 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 PBX3P40426 434 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 ALDH7A1P49419 539 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 NPEPPSP55786 919 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 EMC2Q15006 297 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 HERC4Q5GLZ8 1057 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 NCAPH2Q6IBW4 605 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 TMEM184AQ6ZMB5 413 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 OTUD6AQ7L8S5 288 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 TNFRSF25Q93038 417 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 DHX33Q9H6R0 707 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 ZSWIM4Q9H7M6 989 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 IFT122Q9HBG6 1241 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 AGPAT5Q9NUQ2 364 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 FAM105AQ9NUU6 356 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 WRAP73Q9P2S5 460 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 ARID2Q68CP9 1835 aa12.92□□□□□ -0.34
SQSTM1-203ENST00000422245 FAM205CA6NFA0 338 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 HIDE1A8MVS5 230 aa12.91□□□□□ -0.34
SQSTM1-203ENST00000422245 ZNF623O75123 536 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms