RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 RNF103-CHMP3A0A140T963 221 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 KRT37O76014 449 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 CDK8P49336 464 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 POU5F1BQ06416 359 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 DRAP1Q14919 205 aaPredicted RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 SPATA21Q7Z572 469 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 LY9Q9HBG7 655 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 PNMA2Q9UL42 364 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 POTEB3A0JP26 581 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 POTECB2RU33 542 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 HSPA9P38646 679 aaKnown RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 DEUP1Q05D60 604 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 CCDC85BQ15834 202 aaPredicted RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 POTEBQ6S5H4 581 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 ACAD11Q709F0 780 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 METTL16Q86W50 562 aaKnown RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 SNF8Q96H20 258 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 SEC16BQ96JE7 1060 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 FAM118BQ9BPY3 351 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 EIF2AQ9BY44 585 aaKnown RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 ZCWPW1Q9H0M4 648 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 IPO5O00410 1097 aaKnown RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 BNIP3LO60238 219 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 PMLP29590 882 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 CCND2P30279 289 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 PGM1P36871 562 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 FSCBQ5H9T9 825 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 GPATCH4Q5T3I0 446 aaKnown RBP12.85□□□□□ -0.35
UBR4-205ENST00000417040 LRRC8EQ6NSJ5 796 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 KLC2Q9H0B6 622 aa12.85□□□□□ -0.35
UBR4-205ENST00000417040 GRID2IPA4D2P6 1211 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 KDM1AO60341 852 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 MAN1A2O60476 641 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 SEC24CP53992 1094 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 TMEM270Q6UE05 265 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 RPS6KC1Q96S38 1066 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 INTS2Q9H0H0 1204 aaKnown RBP12.84□□□□□ -0.35
UBR4-205ENST00000417040 ZC4H2Q9NQZ6 224 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 ZBTB1Q9Y2K1 713 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 SYNDIG1LA6NDD5 238 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 HSPA8P11142 646 aaKnown RBP12.84□□□□□ -0.35
UBR4-205ENST00000417040 ANKRD40Q6AI12 368 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 KLC3Q6P597 504 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 FLOT2Q14254 428 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 SLC27A3Q5K4L6 730 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 ATP6V0A1Q93050 837 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 ZNF668Q96K58 619 aaPredicted RBP12.84□□□□□ -0.35
UBR4-205ENST00000417040 CFAP73A6NFT4 308 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 SLC16A4O15374 487 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 ZRANB2O95218 330 aaKnown RBP eCLIP12.84□□□□□ -0.353e-7■■■■□ 20.9
UBR4-205ENST00000417040 ARL6IP4Q66PJ3 421 aaKnown RBP12.84□□□□□ -0.35
UBR4-205ENST00000417040 GLYCTKQ8IVS8 523 aa12.84□□□□□ -0.35
UBR4-205ENST00000417040 PNMA6FA0A0J9YX94 578 aa12.83□□□□□ -0.35
UBR4-205ENST00000417040 KIF1CO43896 1103 aaKnown RBP12.83□□□□□ -0.35
UBR4-205ENST00000417040 GCFC2P16383 781 aaKnown RBP12.83□□□□□ -0.35
UBR4-205ENST00000417040 EIF2AK2P19525 551 aaKnown RBP12.83□□□□□ -0.35
UBR4-205ENST00000417040 IZUMO3Q5VZ72 239 aa12.83□□□□□ -0.35
UBR4-205ENST00000417040 ZNF710Q8N1W2 664 aa12.83□□□□□ -0.35
UBR4-205ENST00000417040 BTBD6Q96KE9 485 aa12.83□□□□□ -0.35
UBR4-205ENST00000417040 NLRP4Q96MN2 994 aa12.83□□□□□ -0.35
UBR4-205ENST00000417040 FAM213AQ9BRX8 229 aa12.83□□□□□ -0.35
UBR4-205ENST00000417040 HNRNPCL2B2RXH8 293 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 HNRNPCL1O60812 293 aaKnown RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 SYF2O95926 243 aaKnown RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 BMP3P12645 472 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 ZSCAN20P17040 1043 aaPredicted RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 ELF1P32519 619 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 POTEFA5A3E0 1075 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 GOLGA8CPA6NN73 597 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 POTEIP0CG38 1075 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 POTEGQ6S5H5 508 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 POTEEQ6S8J3 1075 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 SZRD1Q7Z422 152 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 AURKCQ9UQB9 309 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 ATP7AQ04656 1500 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 PTCH1Q13635 1447 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L15C9J2P7 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L13C9JLJ4 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L11C9JVI0 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L18D6R9N7 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L22D6RA61 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L17D6RBQ6 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L19D6RCP7 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L20D6RJB6 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 STXBP3O00186 592 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 PPEF1O14829 653 aaPredicted RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L24Q0WX57 530 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 TAF1BQ53T94 588 aaPredicted RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 USP17L6PQ6QN14 398 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 SIX6OS1Q8N1H7 587 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 WDR11Q9BZH6 1224 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 LRRC4Q9HBW1 653 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 AGPAT5Q9NUQ2 364 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 MARCOQ9UEW3 520 aaPredicted RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 PPP1R37O75864 691 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 HNRNPH1P31943 449 aaKnown RBP12.83□□□□□ -0.36
UBR4-205ENST00000417040 LIFRP42702 1097 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 BTKQ06187 659 aa12.83□□□□□ -0.36
UBR4-205ENST00000417040 EFTUD2Q15029 972 aaKnown RBP eCLIP12.83□□□□□ -0.362e-6■■■□□ 18.1
UBR4-205ENST00000417040 KIRREL3Q8IZU9 778 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms