RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 IFT74Q96LB3 600 aa16.32■□□□□ 0.2
CHD1-202ENST00000414220 TGS1Q96RS0 853 aaKnown RBP16.32■□□□□ 0.2
CHD1-202ENST00000414220 POLR3FQ9H1D9 316 aaPredicted RBP16.32■□□□□ 0.2
CHD1-202ENST00000414220 ELAC1Q9H777 363 aaKnown RBP16.32■□□□□ 0.2
CHD1-202ENST00000414220 XPNPEP1Q9NQW7 623 aa16.32■□□□□ 0.2
CHD1-202ENST00000414220 CCDC39Q9UFE4 941 aa16.32■□□□□ 0.2
CHD1-202ENST00000414220 STXBP5LQ9Y2K9 1186 aa16.32■□□□□ 0.2
CHD1-202ENST00000414220 RWDD3Q9Y3V2 267 aa16.32■□□□□ 0.2
CHD1-202ENST00000414220 CLIC4Q9Y696 253 aa16.32■□□□□ 0.2
CHD1-202ENST00000414220 WDR81Q562E7 1941 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 PP2D1A8MPX8 630 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 ZSCAN22P10073 491 aaPredicted RBP16.31■□□□□ 0.2
CHD1-202ENST00000414220 FOSL2P15408 326 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 CDC25AP30304 524 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 BTG3Q14201 252 aaPredicted RBP16.31■□□□□ 0.2
CHD1-202ENST00000414220 STK38Q15208 465 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 TWF2Q6IBS0 349 aaKnown RBP16.31■□□□□ 0.2
CHD1-202ENST00000414220 RTN4RL1Q86UN2 441 aaPredicted RBP16.31■□□□□ 0.2
CHD1-202ENST00000414220 ABI1Q8IZP0 508 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 TIPINQ9BVW5 301 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 C2orf40Q9H1Z8 148 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 TMEM161AQ9NX61 479 aa16.31■□□□□ 0.2
CHD1-202ENST00000414220 LRRIQ4A6NIV6 560 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 E9PMD0 336 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 INO80B-WBP1J3KQ70 363 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 GTPBP6O43824 516 aaPredicted RBP16.3■□□□□ 0.2
CHD1-202ENST00000414220 EOMESO95936 686 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 SSBP05455 408 aaKnown RBP eCLIP16.3■□□□□ 0.2
CHD1-202ENST00000414220 AXLP30530 894 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 RAB27AP51159 221 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 PTENP60484 403 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 HYIQ5T013 277 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 ATL3Q6DD88 541 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 SP7Q8TDD2 431 aaPredicted RBP16.3■□□□□ 0.2
CHD1-202ENST00000414220 LINC01599Q8WXQ3 324 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 ARNTL2Q8WYA1 636 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 RSPH1Q8WYR4 309 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 GUCD1Q96NT3 240 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 NFKBIZQ9BYH8 718 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 PRDM12Q9H4Q4 367 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 IFT122Q9HBG6 1241 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 KCND2Q9NZV8 630 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 DAXXQ9UER7 740 aaPredicted RBP16.3■□□□□ 0.2
CHD1-202ENST00000414220 CFAP45Q9UL16 551 aa16.3■□□□□ 0.2
CHD1-202ENST00000414220 PIN4Q9Y237 131 aaKnown RBP16.3■□□□□ 0.2
CHD1-202ENST00000414220 SRPRBQ9Y5M8 271 aaKnown RBP16.3■□□□□ 0.2
CHD1-202ENST00000414220 ADGRA3Q8IWK6 1321 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 LINC01553A4QN01 128 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 C9IYK1 514 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 CSDE1O75534 798 aaKnown RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 DGKIO75912 1065 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 F13A1P00488 732 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 FGFR4P22455 802 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 GLRA2P23416 452 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 MARCKSP29966 332 aaPredicted RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 ERVK-21P61565 698 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 FAM189BP81408 668 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 DSC3Q14574 896 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 SLC39A14Q15043 492 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 ECM1Q16610 540 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 FOXD4L5Q5VV16 416 aaPredicted RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 FAM173BQ6P4H8 233 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 CMTR2Q8IYT2 770 aaKnown RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 DEPTORQ8TB45 409 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 FOXD4L4Q8WXT5 416 aaPredicted RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 MYLIPQ8WY64 445 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 PGBD4Q96DM1 585 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 DRC1Q96MC2 740 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 USP28Q96RU2 1077 aa16.29■□□□□ 0.2
CHD1-202ENST00000414220 MMTAG2Q9BU76 263 aaKnown RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 MORC2Q9Y6X9 1032 aaPredicted RBP16.29■□□□□ 0.2
CHD1-202ENST00000414220 MICAL3Q7RTP6 2002 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 PHLPP2Q6ZVD8 1323 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 A0A0U1RQF3 1178 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 LCHNA4D1U4 455 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 MGEA5O60502 916 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 IGFBP4P22692 258 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 NAMPTP43490 491 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 CAPSQ13938 189 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 PTPAQ15257 358 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 TMEM132AQ24JP5 1023 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 IFNLR1Q8IU57 520 aaPredicted RBP16.28■□□□□ 0.2
CHD1-202ENST00000414220 HACE1Q8IYU2 909 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 SYT2Q8N9I0 419 aaPredicted RBP16.28■□□□□ 0.2
CHD1-202ENST00000414220 KRI1Q8N9T8 703 aaKnown RBP16.28■□□□□ 0.2
CHD1-202ENST00000414220 CNNM3Q8NE01 707 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 ASAP3Q8TDY4 903 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 CCDC51Q96ER9 411 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 TRAIPQ9BWF2 469 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 CCSER1Q9C0I3 900 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 CERS4Q9HA82 394 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 AAASQ9NRG9 546 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 AGPAT5Q9NUQ2 364 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 PRMT7Q9NVM4 692 aaPredicted RBP16.28■□□□□ 0.2
CHD1-202ENST00000414220 ATP6V1DQ9Y5K8 247 aa16.28■□□□□ 0.2
CHD1-202ENST00000414220 SPTLC2O15270 562 aa16.27■□□□□ 0.2
CHD1-202ENST00000414220 YEATS4O95619 227 aa16.27■□□□□ 0.2
CHD1-202ENST00000414220 RB1P06400 928 aa16.27■□□□□ 0.2
CHD1-202ENST00000414220 PLA2G4BP0C869 781 aa16.27■□□□□ 0.2
CHD1-202ENST00000414220 NASPP49321 788 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms