RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 IDI2Q9BXS1 227 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 VPS37BQ9H9H4 285 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 RPF1Q9H9Y2 349 aaKnown RBP12.05□□□□□ -0.48
PTPRF-204ENST00000412568 ATP8A1Q9Y2Q0 1164 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 TBX3O15119 743 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 CYP26A1O43174 497 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 FTLP02792 175 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-204ENST00000412568 ICAM1P05362 532 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 UCHL3P15374 230 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 BACE1P56817 501 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 BPIFB4P59827 614 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 C9orf131Q5VYM1 1079 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 TTI2Q6NXR4 508 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 PDXDC1Q6P996 788 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 ANKRD42Q8N9B4 389 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-204ENST00000412568 GMCL1Q96IK5 515 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 JPH2Q9BR39 696 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-204ENST00000412568 RAB17Q9H0T7 212 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 SEL1LQ9UBV2 794 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 TCHHQ07283 1943 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-204ENST00000412568 PRKCEQ02156 737 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 CDO1Q16878 200 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 SPDYE2Q495Y8 402 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 ANKS4BQ8N8V4 417 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 SLC30A5Q8TAD4 765 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 BCAS4Q8TDM0 211 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 PI4K2AQ9BTU6 479 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 HSPBP1Q9NZL4 362 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 TXNDC16Q9P2K2 825 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 ANAPC7Q9UJX3 599 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 MORC2Q9Y6X9 1032 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-204ENST00000412568 CACNA1FO60840 1977 aa12.05□□□□□ -0.48
PTPRF-204ENST00000412568 ZNF18P17022 549 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 FUT2Q10981 343 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 IL17AQ16552 155 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 TKFCQ3LXA3 575 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 SLC17A8Q8NDX2 589 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 NEK9Q8TD19 979 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 HEXIM2Q96MH2 286 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 CALN1Q9BXU9 219 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 STMN4Q9H169 189 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 RBAKQ9NYW8 714 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 CNOT8Q9UFF9 292 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 NFU1Q9UMS0 254 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 VIRMAQ69YN4 1812 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 C19orf81C9J6K1 198 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 TLR3O15455 904 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 SREBF1P36956 1147 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 SARSP49591 514 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 VSNL1P62760 191 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 B4GALNT4Q76KP1 1039 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 MS4A14Q96JA4 679 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 PNMA5Q96PV4 448 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 AGO2Q9UKV8 859 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 ITIH6Q6UXX5 1313 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 MYL3P08590 195 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 KRT15P19012 456 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 SLCO1A2P46721 670 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 LIG3P49916 1009 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 YWHAEP62258 255 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 KRT81Q14533 505 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 TTLL4Q14679 1199 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 DENND2CQ68D51 928 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 CTAGE3PQ8IX95 158 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 SYT2Q8N9I0 419 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 KIAA0895Q8NCT3 520 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 DDX47Q9H0S4 455 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 ADAM21Q9UKJ8 722 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 EML1O00423 815 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 POLR2BP30876 1174 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 KRT39Q6A163 491 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 RBM46Q8TBY0 533 aaKnown RBP12.04□□□□□ -0.48
PTPRF-204ENST00000412568 RSAD2Q8WXG1 361 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 RPS6KC1Q96S38 1066 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 DAAM1Q9Y4D1 1078 aa12.04□□□□□ -0.48
PTPRF-204ENST00000412568 LRRD1A4D1F6 860 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 ADM5C9JUS6 153 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 CSDE1O75534 798 aaKnown RBP12.03□□□□□ -0.48
PTPRF-204ENST00000412568 RPS12P25398 132 aaKnown RBP12.03□□□□□ -0.48
PTPRF-204ENST00000412568 EPHB4P54760 987 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 ERVK-24P63145 666 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 BFSP1Q12934 665 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 ALCAMQ13740 583 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 OR6B2Q6IFH4 312 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 DNAJC24Q6P3W2 148 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 TARS2Q9BW92 718 aaKnown RBP12.03□□□□□ -0.48
PTPRF-204ENST00000412568 CAPS2Q9BXY5 557 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 ADAM22Q9P0K1 906 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 FAM169AQ9Y6X4 670 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 RGPD2P0DJD1 1756 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 ADAMTS3O15072 1205 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 TGFB2P61812 414 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 SGO2Q562F6 1265 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 CYP4F22Q6NT55 531 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 ANKS1AQ92625 1134 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 NSRP1Q9H0G5 558 aaKnown RBP12.03□□□□□ -0.48
PTPRF-204ENST00000412568 L2HGDHQ9H9P8 463 aa12.03□□□□□ -0.48
PTPRF-204ENST00000412568 PIK3R2O00459 728 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms