RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 ASIC1P78348 528 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 GPNMBQ14956 572 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 EFCAB12Q6NXP0 572 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 TAF2Q6P1X5 1199 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 TRAF7Q6Q0C0 670 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 DYMQ7RTS9 669 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 METTL13Q8N6R0 699 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 KCNG1Q9UIX4 513 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 PCDHA2Q9Y5H9 948 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 COL4A3BPQ9Y5P4 624 aa18.28■□□□□ 0.52
TSPAN4-208ENST00000409531 PVALEFA0A1B0GWK0 134 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 RSPH10B2B2RC85 870 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 HIP1RO75146 1068 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 FAM13AO94988 1023 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 RSPH10BP0C881 870 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 ACTN1P12814 892 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 SMAD3P84022 425 aaKnown RBP18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 RAD51AP2Q09MP3 1159 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 DPYDQ12882 1025 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 CUL4BQ13620 913 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 GIT2Q14161 759 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 CAMK4Q16566 473 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 FAM102BQ5T8I3 360 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 IER5Q5VY09 327 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 CAVIN1Q6NZI2 390 aaKnown RBP18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 RPAINQ86UA6 219 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 CCDC65Q8IXS2 484 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 DNAJC19Q96DA6 116 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 MAP7D2Q96T17 732 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 REEP2Q9BRK0 252 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 BLZF1Q9H2G9 400 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 SUGCTQ9HAC7 445 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 C17orf75Q9HAS0 396 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 XPNPEP1Q9NQW7 623 aa18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 LARSQ9P2J5 1176 aaKnown RBP18.27■□□□□ 0.52
TSPAN4-208ENST00000409531 COL6A3P12111 3177 aa18.27■□□□□ 0.51
TSPAN4-208ENST00000409531 SMIM35A0A1B0GVV1 85 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 NBNO60934 754 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 CXCL10P02778 98 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 IDEP14735 1019 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 GAP43P17677 238 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 CDC42EP1Q00587 391 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 PNOCQ13519 176 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 MXD4Q14582 209 aaPredicted RBP18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 RSPH3Q86UC2 560 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 ZNF710Q8N1W2 664 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 PSPC1Q8WXF1 523 aaKnown RBP18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 SMARCE1Q969G3 411 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 GSDMAQ96QA5 445 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 PARVGQ9HBI0 331 aa18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 CXXC1Q9P0U4 656 aaPredicted RBP18.26■□□□□ 0.51
TSPAN4-208ENST00000409531 NPHP3-ACAD11A0A0J9YXS1 232 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 ASAP2O43150 1006 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 RPN1P04843 607 aaKnown RBP18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 PRR29P0C7W0 189 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 MBTPS1Q14703 1052 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 PPP2R5AQ15172 486 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 FAM26DQ5JW98 314 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 RUFY4Q6ZNE9 571 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 UNC13DQ70J99 1090 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 MAEAQ7L5Y9 396 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 LRRC71Q8N4P6 559 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 LINC01465Q8N7H1 131 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 IFT74Q96LB3 600 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 GTPBP4Q9BZE4 634 aaKnown RBP18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 POLR3FQ9H1D9 316 aaPredicted RBP18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 PANK4Q9NVE7 773 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 RMND1Q9NWS8 449 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 TMEM63CQ9P1W3 806 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 SEL1LQ9UBV2 794 aa18.25■□□□□ 0.51
TSPAN4-208ENST00000409531 FRMD3A2A2Y4 597 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 LETM1O95202 739 aaPredicted RBP18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 CASP1P29466 404 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 ARL2P36404 184 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 CLCN3P51790 818 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 ZNF131P52739 623 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 CACNB1Q02641 598 aaPredicted RBP18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 NME8Q8N427 588 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 SPATA20Q8TB22 786 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 DNAJB3Q8WWF6 145 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 TMEM143Q96AN5 459 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 ZHX3Q9H4I2 956 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 EXOC1Q9NV70 894 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 KIAA1468Q9P260 1216 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 SUCLA2Q9P2R7 463 aaPredicted RBP18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 AKT3Q9Y243 479 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 PCDHA5Q9Y5H7 936 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 SLC4A7Q9Y6M7 1214 aa18.24■□□□□ 0.51
TSPAN4-208ENST00000409531 ZBBXA8MT70 800 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 PLS3P13797 630 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 SMTNP53814 917 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 MAPK7Q13164 816 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 DMP1Q13316 513 aaPredicted RBP18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 TFDP1Q14186 410 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 KCNB1Q14721 858 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 HERC4Q5GLZ8 1057 aaPredicted RBP18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 NT5DC1Q5TFE4 455 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 CNKSR3Q6P9H4 555 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 DAW1Q8N136 415 aa18.23■□□□□ 0.51
TSPAN4-208ENST00000409531 MYCT1Q8N699 235 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms