RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 C1orf186Q6ZWK4 172 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 UBE2Q1Q7Z7E8 422 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 EXOC8Q8IYI6 725 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 MTRQ99707 1265 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 RUSC1Q9BVN2 902 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 TRPV6Q9H1D0 765 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 DHX33Q9H6R0 707 aaKnown RBP14.81□□□□□ -0.04
LIMS1-204ENST00000409441 PDLIM7Q9NR12 457 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 BMP2KQ9NSY1 1161 aaPredicted RBP14.81□□□□□ -0.04
LIMS1-204ENST00000409441 SCN10AQ9Y5Y9 1956 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 IGKV6-21A0A0C4DH24 114 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 PPP1R3GB7ZBB8 358 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 USO1O60763 962 aaKnown RBP14.81□□□□□ -0.04
LIMS1-204ENST00000409441 AMPD3Q01432 767 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 WDR81Q562E7 1941 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 C1orf53Q5VUE5 145 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 EFCAB12Q6NXP0 572 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 MAEAQ7L5Y9 396 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 GPBP1Q86WP2 473 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 METTL13Q8N6R0 699 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 RETREG2Q8NC44 543 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 POLD4Q9HCU8 107 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 TRMT13Q9NUP7 481 aaKnown RBP14.81□□□□□ -0.04
LIMS1-204ENST00000409441 KCND2Q9NZV8 630 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 PCDHA2Q9Y5H9 948 aa14.81□□□□□ -0.04
LIMS1-204ENST00000409441 NPHP3-ACAD11A0A0J9YXS1 232 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 MYMKA6NI61 221 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 KIF2AO00139 706 aaPredicted RBP14.8□□□□□ -0.04
LIMS1-204ENST00000409441 CCP110O43303 1012 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 CYP2C9P11712 490 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 KCNB1Q14721 858 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 EMC2Q15006 297 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 ZNF658Q5TYW1 1059 aaPredicted RBP14.8□□□□□ -0.04
LIMS1-204ENST00000409441 MED15Q96RN5 788 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 CTAGE1Q96RT6 745 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 JPH2Q9BR39 696 aaPredicted RBP14.8□□□□□ -0.04
LIMS1-204ENST00000409441 GTPBP4Q9BZE4 634 aaKnown RBP14.8□□□□□ -0.04
LIMS1-204ENST00000409441 LRRC27Q9C0I9 530 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 ATP6V0A4Q9HBG4 840 aa14.8□□□□□ -0.04
LIMS1-204ENST00000409441 B4GALT4O60513 344 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 PQBP1O60828 265 aaKnown RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 RPN1P04843 607 aaKnown RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 KRT18P05783 430 aaKnown RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 TNNT1P13805 278 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 CD44P16070 742 aaKnown RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 TMOD1P28289 359 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 RAD51AP2Q09MP3 1159 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 TBX2Q13207 712 aaPredicted RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 MKRN4PQ13434 485 aaPredicted RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 SNX17Q15036 470 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 CDKAL1Q5VV42 579 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 DYMQ7RTS9 669 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 ANKRD33Q7Z3H0 272 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 FAM126BQ8IXS8 530 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 CCAR2Q8N163 923 aaKnown RBP14.79□□□□□ -0.04
LIMS1-204ENST00000409441 LRRC71Q8N4P6 559 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 MCPH1Q8NEM0 835 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 DDX12PQ92771 950 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 TMEM143Q96AN5 459 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 XPNPEP1Q9NQW7 623 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 INTS13Q9NVM9 706 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 RWDD2AQ9UIY3 292 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 NOD1Q9Y239 953 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 PAXBP1Q9Y5B6 917 aa14.79□□□□□ -0.04
LIMS1-204ENST00000409441 MROH7Q68CQ1 1323 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 A0A1B0GTH6 734 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 SMIM35A0A1B0GVV1 85 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 TUBB4AP04350 444 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 GUCY2CP25092 1073 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 CASP1P29466 404 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 DNM2P50570 870 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 TLE2Q04725 743 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 DRP2Q13474 957 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 GIT2Q14161 759 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 NR1I3Q14994 352 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 LRRC26Q2I0M4 334 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 TRIM60Q495X7 471 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 FAM102BQ5T8I3 360 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 IER5Q5VY09 327 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 RUFY4Q6ZNE9 571 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 SERINC5Q86VE9 423 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 KIAA0319LQ8IZA0 1049 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 TOX2Q96NM4 488 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 C7orf25Q9BPX7 421 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 BLZF1Q9H2G9 400 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 GPRC5CQ9NQ84 441 aa14.78□□□□□ -0.04
LIMS1-204ENST00000409441 DCDC2CA8MYV0 355 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 GAS2O43903 313 aaKnown RBP14.77□□□□□ -0.04
LIMS1-204ENST00000409441 CD4P01730 458 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 ARL2P36404 184 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 CLCN3P51790 818 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 SPAG1Q07617 926 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 PTK7Q13308 1070 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 SPECC1LQ69YQ0 1117 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 TAF2Q6P1X5 1199 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 NYAP1Q6ZVC0 841 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 LINC01465Q8N7H1 131 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 DNAJB3Q8WWF6 145 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 TCP11Q8WWU5 503 aa14.77□□□□□ -0.04
LIMS1-204ENST00000409441 PRPF31Q8WWY3 499 aaKnown RBP14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms