RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 BMP6P22004 513 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 NAMPTP43490 491 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 ZNF445P59923 1031 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 DPCR1Q3MIW9 517 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 KSR1Q8IVT5 923 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 MLKLQ8NB16 471 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 SLC43A3Q8NBI5 491 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 SLC17A8Q8NDX2 589 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 DEPTORQ8TB45 409 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 SPIRE2Q8WWL2 714 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 NLRP4Q96MN2 994 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 PPP1R16BQ96T49 567 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 DACH1Q9UI36 760 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 MAPK8IP1Q9UQF2 711 aa19.93■□□□□ 0.78
SDC1-203ENST00000403076 KIAA0100Q14667 2235 aaKnown RBP19.93■□□□□ 0.78
SDC1-203ENST00000403076 KIF20AO95235 890 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 MAPTP10636 758 aaKnown RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 MNX1P50219 401 aaPredicted RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 ATN1P54259 1190 aaPredicted RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 ZNF720Q7Z2F6 126 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 HAUS6Q7Z4H7 955 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 RSPH3Q86UC2 560 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 RNF149Q8NC42 400 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 KIAA0895Q8NCT3 520 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 DIS3LQ8TF46 1054 aaKnown RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 ZNF668Q96K58 619 aaPredicted RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 TSPY26PQ9H489 355 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 TRMT13Q9NUP7 481 aaKnown RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 PCDHB13Q9Y5F0 798 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 TRIP12Q14669 1992 aaPredicted RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 H0YCG3 227 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 PRCPP42785 496 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 NLRP11P59045 1033 aaKnown RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 CDC42EP1Q00587 391 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 CAPSQ13938 189 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 ANO6Q4KMQ2 910 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 KLHL10Q6JEL2 608 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 MYOCDQ8IZQ8 938 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 GLIS3Q8NEA6 775 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 PAWRQ96IZ0 340 aaKnown RBP19.92■□□□□ 0.78
SDC1-203ENST00000403076 FUCA2Q9BTY2 467 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 KIFC3Q9BVG8 833 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 FGFBP2Q9BYJ0 223 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 DNAJC25Q9H1X3 360 aa19.92■□□□□ 0.78
SDC1-203ENST00000403076 PRPF6O94906 941 aaKnown RBP19.91■□□□□ 0.78
SDC1-203ENST00000403076 MYBP10242 640 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 NCKAP1LP55160 1127 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 TMEM62Q0P6H9 643 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 ALCAMQ13740 583 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 ZC2HC1CQ53FD0 456 aaPredicted RBP19.91■□□□□ 0.78
SDC1-203ENST00000403076 SLC39A5Q6ZMH5 540 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 SERINC5Q86VE9 423 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 ZBTB8OSQ8IWT0 167 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 NME8Q8N427 588 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 NLRP7Q8WX94 980 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 FIZ1Q96SL8 496 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 NTPCRQ9BSD7 190 aaKnown RBP19.91■□□□□ 0.78
SDC1-203ENST00000403076 NAT10Q9H0A0 1025 aaKnown RBP19.91■□□□□ 0.78
SDC1-203ENST00000403076 TRPV6Q9H1D0 765 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 C11orf49Q9H6J7 331 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 GINS2Q9Y248 185 aa19.91■□□□□ 0.78
SDC1-203ENST00000403076 DENND3A2RUS2 1198 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 RPLP2P05387 115 aaKnown RBP19.9■□□□□ 0.78
SDC1-203ENST00000403076 PPP1R2P41236 205 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 PHKA2P46019 1235 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 CENPFP49454 3210 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 CDK7P50613 346 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 CASP5P51878 434 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 PTK7Q13308 1070 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 NELFCDQ8IXH7 590 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 ADSSL1Q8N142 457 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 GUF1Q8N442 669 aaKnown RBP19.9■□□□□ 0.78
SDC1-203ENST00000403076 C2orf40Q9H1Z8 148 aa19.9■□□□□ 0.78
SDC1-203ENST00000403076 A0A087WZ62 844 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 PPP1R3GB7ZBB8 358 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 M0QZ92 97 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 PSMA7O14818 248 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 TLR3O15455 904 aaKnown RBP19.89■□□□□ 0.77
SDC1-203ENST00000403076 COL6A1P12109 1028 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 CD44P16070 742 aaKnown RBP19.89■□□□□ 0.77
SDC1-203ENST00000403076 GPC3P51654 580 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 KIZQ2M2Z5 673 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 C11orf57Q6ZUT1 292 aaPredicted RBP19.89■□□□□ 0.77
SDC1-203ENST00000403076 NECAB2Q7Z6G3 386 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 ZNF410Q86VK4 478 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 TMEM161BQ8NDZ6 487 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 FDXACB1Q9BRP7 624 aaPredicted RBP19.89■□□□□ 0.77
SDC1-203ENST00000403076 MROH7Q68CQ1 1323 aa19.89■□□□□ 0.77
SDC1-203ENST00000403076 K7ERI5 159 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 EIF3DO15371 548 aaKnown RBP eCLIP19.88■□□□□ 0.774e-8■■■□□ 16.7
SDC1-203ENST00000403076 B4GALT4O60513 344 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 PQBP1O60828 265 aaKnown RBP19.88■□□□□ 0.77
SDC1-203ENST00000403076 ABCD1P33897 745 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 THPOP40225 353 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 EFNA5P52803 228 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 STRN3Q13033 797 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 EPM2AIP1Q7L775 607 aaPredicted RBP19.88■□□□□ 0.77
SDC1-203ENST00000403076 SYCP3Q8IZU3 236 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 SCFD1Q8WVM8 642 aa19.88■□□□□ 0.77
SDC1-203ENST00000403076 ACCSQ96QU6 501 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms