RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ZNF853P0CG23 659 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 MAP3K21Q5TCX8 1036 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 MARCH10Q8NA82 808 aaPredicted RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 MT-ND3P03897 115 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 GMPSP49915 693 aaPredicted RBP12.15□□□□□ -0.46
TTC28-201ENST00000397906 GRM4Q14833 912 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 KIF19Q2TAC6 998 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 SLC13A4Q9UKG4 626 aa12.15□□□□□ -0.46
TTC28-201ENST00000397906 MX2P20592 715 aa12.15□□□□□ -0.47
TTC28-201ENST00000397906 GNA15P30679 374 aa12.15□□□□□ -0.47
TTC28-201ENST00000397906 PSMC5P62195 406 aa12.15□□□□□ -0.47
TTC28-201ENST00000397906 VPS72Q15906 364 aa12.15□□□□□ -0.47
TTC28-201ENST00000397906 ARL6IP4Q66PJ3 421 aaKnown RBP12.15□□□□□ -0.47
TTC28-201ENST00000397906 ZNF280CQ8ND82 737 aa12.15□□□□□ -0.47
TTC28-201ENST00000397906 SNX19Q92543 992 aa12.15□□□□□ -0.47
TTC28-201ENST00000397906 INTS9Q9NV88 658 aaKnown RBP12.15□□□□□ -0.47
TTC28-201ENST00000397906 RBAKQ9NYW8 714 aaPredicted RBP12.15□□□□□ -0.47
TTC28-201ENST00000397906 RPAP1Q9BWH6 1393 aaPredicted RBP12.15□□□□□ -0.47
TTC28-201ENST00000397906 C2orf40Q9H1Z8 148 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 C11orf70Q9BRQ4 267 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 A6NNZ2 444 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 COG2Q14746 738 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 TUBB8Q3ZCM7 444 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 SPATA2LQ8IUW3 424 aaPredicted RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 SIRT2Q8IXJ6 389 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 OPHN1O60890 802 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 RSBN1LQ6PCB5 846 aaPredicted RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 SH3KBP1Q96B97 665 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 KLC2Q9H0B6 622 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 SMIM24O75264 130 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 MRPS25P82663 173 aaKnown RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.14□□□□□ -0.47
TTC28-201ENST00000397906 PYROXD1Q8WU10 500 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 ACAP3Q96P50 834 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 CDC42BPAQ5VT25 1732 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 FLT1P17948 1338 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 MAP3K7O43318 606 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 HADHAP40939 763 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 ZNF746Q6NUN9 644 aaPredicted RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 UNC13DQ70J99 1090 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 DHX38Q92620 1227 aaKnown RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 CDC42BPBQ9Y5S2 1711 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 VAMP7P51809 220 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 PDE11AQ9HCR9 933 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 BARHL2Q9NY43 387 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 C2CD2LO14523 706 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 ACSL3O95573 720 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 VEPH1Q14D04 833 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 TAS2R42Q7RTR8 314 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 MAML1Q92585 1016 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 SPZ1Q9BXG8 430 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 ZNF70Q9UC06 446 aaPredicted RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 ZC3H4Q9UPT8 1303 aaKnown RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 SNX2O60749 519 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 FOXO4P98177 505 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 HAUS8Q9BT25 410 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 SUCLA2Q9P2R7 463 aaPredicted RBP12.14□□□□□ -0.47
TTC28-201ENST00000397906 LAMC1P11047 1609 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 RARBP10826 455 aa12.14□□□□□ -0.47
TTC28-201ENST00000397906 PLA2R1Q13018 1463 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 KRT31Q15323 416 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 ACBD5Q5T8D3 534 aaPredicted RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 RASSF4Q9H2L5 321 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 F8W8V4 182 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 TJP3O95049 919 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 KCNA1Q09470 495 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 RESP18Q5W5W9 173 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 HIP1RO75146 1068 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 CDC27P30260 824 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 VCX3AQ9NNX9 186 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 MYOZ2Q9NPC6 264 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 ASNSD1Q9NWL6 643 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 SPATA31A6Q5VVP1 1343 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 DNAJC6O75061 913 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 SEC31AO94979 1220 aaKnown RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 OCRLQ01968 901 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 RESTQ13127 1097 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 CNOT8Q9UFF9 292 aaKnown RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 BTBD8Q5XKL5 378 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 SCYL3Q8IZE3 742 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 SEPT5Q99719 369 aaPredicted RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 TTC7AQ9ULT0 858 aaPredicted RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 ORC6Q9Y5N6 252 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 BZW1Q7L1Q6 419 aaKnown RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 ALKBH5Q6P6C2 394 aaKnown RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 MB21D1Q8N884 522 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 SPATA31A1Q5TZJ5 1347 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 UBA6A0AVT1 1052 aaPredicted RBP12.13□□□□□ -0.47
TTC28-201ENST00000397906 KIF28PB7ZC32 967 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 PRRG1O14668 218 aa12.13□□□□□ -0.47
TTC28-201ENST00000397906 NOP14P78316 857 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 DHX9Q08211 1270 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 TMEM143Q96AN5 459 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 KIAA1586Q9HCI6 787 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 DAGLAQ9Y4D2 1042 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 AK9Q5TCS8 1911 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 FGGP02679 453 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 STAT5BP51692 787 aa12.12□□□□□ -0.47
TTC28-201ENST00000397906 KPNA2P52292 529 aaKnown RBP12.12□□□□□ -0.47
TTC28-201ENST00000397906 TOB2Q14106 344 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms