RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 STC2O76061 302 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 PRPF6O94906 941 aaKnown RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CYP17A1P05093 508 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 SCNN1GP51170 649 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CRHR2Q13324 411 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 FHL2Q14192 279 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 RRP1BQ14684 758 aaKnown RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CLEC14AQ86T13 490 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CACTINQ8WUQ7 758 aaKnown RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 RABGGTAQ92696 567 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 SLC7A6OSQ96CW6 309 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 WDR92Q96MX6 357 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 SLC6A15Q9H2J7 730 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 NELFAQ9H3P2 528 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 SLC2A4RGQ9NR83 387 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 POLR3BQ9NW08 1133 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 KCMF1Q9P0J7 381 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 CEP72Q9P209 647 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 VWA7Q9Y334 891 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 SPO11Q9Y5K1 396 aa3.28□□□□□ -1.88
VPS13A-206ENST00000376646 MRPL42Q9Y6G3 142 aaKnown RBP3.28□□□□□ -1.88
VPS13A-206ENST00000376646 A0A0A6YYK5 440 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 ELL2O00472 640 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 H2AFYO75367 372 aaKnown RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 MAFO75444 373 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 PCDH8O95206 1070 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 HHEXQ03014 270 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 ADCY2Q08462 1091 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 EPHA7Q15375 998 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 SEPT7Q16181 437 aaKnown RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 LRRTM3Q86VH5 581 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 ELOA2Q8IYF1 753 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 C7orf31Q8N865 590 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 UBXN4Q92575 508 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 E2F7Q96AV8 911 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 SOX7Q9BT81 388 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 MMRN2Q9H8L6 949 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 IL23AQ9NPF7 189 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 MAGEC2Q9UBF1 373 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 TGM5O43548 720 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 CFBP00751 764 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 FLT3P36888 993 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 DSG1Q02413 1049 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 FAM214AQ32MH5 1076 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 KRT40Q6A162 431 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 USP51Q70EK9 711 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 MB21D1Q8N884 522 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 PLA2G15Q8NCC3 412 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 GFM2Q969S9 779 aaKnown RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 ZNF496Q96IT1 587 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 GPR101Q96P66 508 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-206ENST00000376646 ZKSCAN5Q9Y2L8 839 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 GIT1Q9Y2X7 761 aa3.27□□□□□ -1.89
VPS13A-206ENST00000376646 OPHN1O60890 802 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 RFPL3O75679 317 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 F2P00734 622 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 PTTG1IPP53801 180 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 SLC25A3Q00325 362 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 TCEA2Q15560 299 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 ELAVL1Q15717 326 aaKnown RBP3.26□□□□□ -1.89
VPS13A-206ENST00000376646 ZBTB41Q5SVQ8 909 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 FAM111BQ6SJ93 734 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 KANSL1Q7Z3B3 1105 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 JAZF1Q86VZ6 243 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 NEU4Q8WWR8 484 aaPredicted RBP3.26□□□□□ -1.89
VPS13A-206ENST00000376646 TARS2Q9BW92 718 aaKnown RBP3.26□□□□□ -1.89
VPS13A-206ENST00000376646 HAPLN2Q9GZV7 340 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 SPTLC3Q9NUV7 552 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 IFT57Q9NWB7 429 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 ING3Q9NXR8 418 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 RCAN3Q9UKA8 241 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 GAS7O60861 476 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 FAM20BO75063 409 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 RPS6KA4O75676 772 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 TUBA3CQ13748 450 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 TUBA3EQ6PEY2 450 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 BMP8AQ7Z5Y6 402 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 PHYKPLQ8IUZ5 450 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 RPGRQ92834 1020 aaKnown RBP3.26□□□□□ -1.89
VPS13A-206ENST00000376646 NOL10Q9BSC4 688 aaKnown RBP3.26□□□□□ -1.89
VPS13A-206ENST00000376646 MSRAQ9UJ68 235 aa3.26□□□□□ -1.89
VPS13A-206ENST00000376646 REXO2Q9Y3B8 237 aaKnown RBP3.26□□□□□ -1.89
VPS13A-206ENST00000376646 A0A0A6YYJ9 748 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 IGSF3O75054 1194 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 BCAR1P56945 870 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 SMAD3P84022 425 aaKnown RBP3.25□□□□□ -1.89
VPS13A-206ENST00000376646 ABHD18Q0P651 414 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 CRB2Q5IJ48 1285 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 KIAA1841Q6NSI8 718 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 ZNF627Q7L945 461 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 HOMER1Q86YM7 354 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 NIM1KQ8IY84 436 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 PIK3C3Q8NEB9 887 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 TCF25Q9BQ70 676 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 MENTQ9BUN1 341 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 TRIM8Q9BZR9 551 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 PITHD1Q9GZP4 211 aaPredicted RBP3.25□□□□□ -1.89
VPS13A-206ENST00000376646 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.25□□□□□ -1.89
VPS13A-206ENST00000376646 USP18Q9UMW8 372 aa3.25□□□□□ -1.89
VPS13A-206ENST00000376646 KRTAP23-1A1A580 65 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms