RNA–Protein interactions for RNA: ENST00000370966.9

DEPDC1-201, Transcript of DEP domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DEPDC1, Length 4,586 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-201ENST00000370966 ZBED1O96006 694 aa12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 ATP1A1P05023 1023 aaKnown RBP12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 NR1H3Q13133 447 aa12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 TRIP13Q15645 432 aaPredicted RBP12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 RBM43Q6ZSC3 357 aaKnown RBP12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 BARGINQ6ZT62 677 aa12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 METTL23Q86XA0 190 aa12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 ZNF564Q8TBZ8 553 aaPredicted RBP12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 TBK1Q9UHD2 729 aa12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 PCDHA10Q9Y5I2 948 aa12.71□□□□□ -0.38
DEPDC1-201ENST00000370966 GPR75-ASB3A0A0A6YYF3 556 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 PSMA2P25787 234 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 CNGA1P29973 690 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 GGCXP38435 758 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 MRPS25P82663 173 aaKnown RBP12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 TNFAIP2Q03169 654 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 ASPHQ12797 758 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 PTPAQ15257 358 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 WRNIP1Q96S55 665 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 FAM213AQ9BRX8 229 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 WNT8AQ9H1J5 351 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 KCND2Q9NZV8 630 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 PREX1Q8TCU6 1659 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 CASQ2O14958 399 aaPredicted RBP12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 ACSL3O95573 720 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 GGPS1O95749 300 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 NDUFB10O96000 172 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 KIF22Q14807 665 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 SH2D4BQ5SQS7 431 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 GLYCTKQ8IVS8 523 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 AGXT2Q9BYV1 514 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 IRX2Q9BZI1 471 aaPredicted RBP12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 DDX47Q9H0S4 455 aaKnown RBP12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 C2orf40Q9H1Z8 148 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 TXLNGQ9NUQ3 528 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 GABBR1Q9UBS5 961 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 GPC4O75487 556 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 ITPK1Q13572 414 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 NXNQ6DKJ4 435 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 VWDEQ8N2E2 1590 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 DNAAF3Q8N9W5 541 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 FBXL13Q8NEE6 735 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 POLD4Q9HCU8 107 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 JCADQ9P266 1359 aa12.7□□□□□ -0.38
DEPDC1-201ENST00000370966 A0A0G2JLW4 131 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 IQANK1A0A1B0GTG1 560 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 KIAA0391O15091 583 aaKnown RBP12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 MYBL1P10243 752 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 ITKQ08881 620 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 PDCLQ13371 301 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 TMEM270Q6UE05 265 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 MID2Q9UJV3 735 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 PITPNM2Q9BZ72 1349 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 MYMKA6NI61 221 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 OATP04181 439 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 ECE1P42892 770 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 SCARA5Q6ZMJ2 495 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 FBXL16Q8N461 479 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 TTC39CQ8N584 583 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 DAGLBQ8NCG7 672 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 MTRQ99707 1265 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 NGRNQ9NPE2 291 aaKnown RBP12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 EMSYQ7Z589 1322 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 SLIT1O75093 1534 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 NCK2O43639 380 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 LUC7L3O95232 432 aaKnown RBP12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 TRIM49P0CI25 452 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 TRIM49CP0CI26 452 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 FXR2P51116 673 aaKnown RBP eCLIP12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 AP3M2P53677 418 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 ADCY1Q08828 1119 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 NUGGCQ68CJ6 796 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 SIX6OS1Q8N1H7 587 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 TTC25Q96NG3 672 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 ACAD9Q9H845 621 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 GSTA1P08263 222 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 GSTA2P09210 222 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 PHKA2P46019 1235 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 ARL4CP56559 192 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 PCGF5Q86SE9 256 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 C11orf70Q9BRQ4 267 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 VIPAS39Q9H9C1 493 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 SPATA31D1Q6ZQQ2 1576 aa12.69□□□□□ -0.38
DEPDC1-201ENST00000370966 GOLGA8CPA6NN73 597 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 KRT37O76014 449 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 ABL1P00519 1130 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 KPNA2P52292 529 aaKnown RBP12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 IFRD2Q12894 506 aaPredicted RBP12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 DHX34Q14147 1143 aaKnown RBP12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 SWSAP1Q6NVH7 229 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 RAD9BQ6WBX8 426 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 APOBEC3FQ8IUX4 373 aaKnown RBP12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 SCYL3Q8IZE3 742 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 LINC00116Q8NCU8 138 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 LPAR1Q92633 364 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 NUP85Q9BW27 656 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 TMEM60Q9H2L4 133 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 ZNF302Q9NR11 478 aa12.68□□□□□ -0.38
DEPDC1-201ENST00000370966 TOPORSQ9NS56 1045 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms