RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 DHX8Q14562 1220 aaKnown RBP16.45■□□□□ 0.22
COL9A1-204ENST00000370496 LRIT3Q3SXY7 679 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 RRAGBQ5VZM2 374 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 CCDC73Q6ZRK6 1079 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 LARP4BQ92615 738 aaKnown RBP16.45■□□□□ 0.22
COL9A1-204ENST00000370496 RAD54LQ92698 747 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 FTHL17Q9BXU8 183 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 SCAND2PQ9GZW5 306 aaPredicted RBP16.45■□□□□ 0.22
COL9A1-204ENST00000370496 STK17AQ9UEE5 414 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 ST3GAL5Q9UNP4 418 aa16.45■□□□□ 0.22
COL9A1-204ENST00000370496 DENND3A2RUS2 1198 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 KRT18P05783 430 aaKnown RBP16.44■□□□□ 0.22
COL9A1-204ENST00000370496 GLRA2P23416 452 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 ARL2P36404 184 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 SLC12A3P55017 1021 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 DEFB103AP81534 67 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 RINT1Q6NUQ1 792 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 GPBP1Q86WP2 473 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 MYOCDQ8IZQ8 938 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 SYT2Q8N9I0 419 aaPredicted RBP16.44■□□□□ 0.22
COL9A1-204ENST00000370496 KIFAP3Q92845 792 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 DRC1Q96MC2 740 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 INO80BQ9C086 356 aaPredicted RBP16.44■□□□□ 0.22
COL9A1-204ENST00000370496 ERVK-5Q9HDB9 667 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 TSHZ2Q9NRE2 1034 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 RCOR1Q9UKL0 485 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 PCDHA7Q9UN72 937 aa16.44■□□□□ 0.22
COL9A1-204ENST00000370496 RBM19Q9Y4C8 960 aaKnown RBP16.44■□□□□ 0.22
COL9A1-204ENST00000370496 HIP1RO75146 1068 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 CSDE1O75534 798 aaKnown RBP16.43■□□□□ 0.22
COL9A1-204ENST00000370496 FGFR4P22455 802 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 RAD51AP2Q09MP3 1159 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 MCM6Q14566 821 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 PPP2R5AQ15172 486 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 FAM109BQ6ICB4 259 aaPredicted RBP16.43■□□□□ 0.22
COL9A1-204ENST00000370496 SHC4Q6S5L8 630 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 CATSPER4Q7RTX7 472 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 PDILTQ8N807 584 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 IFT74Q96LB3 600 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 TIPINQ9BVW5 301 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 IFT122Q9HBG6 1241 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 BLOC1S4Q9NUP1 217 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 FAM13BQ9NYF5 915 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 KCND2Q9NZV8 630 aa16.43■□□□□ 0.22
COL9A1-204ENST00000370496 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.42■□□□□ 0.22
COL9A1-204ENST00000370496 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.42■□□□□ 0.22
COL9A1-204ENST00000370496 INO80B-WBP1J3KQ70 363 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 ERLIN2O94905 339 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 IBSPP21815 317 aaPredicted RBP16.42■□□□□ 0.22
COL9A1-204ENST00000370496 GUCY2CP25092 1073 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 AXDND1Q5T1B0 1012 aaPredicted RBP16.42■□□□□ 0.22
COL9A1-204ENST00000370496 PPP4R3CPQ6ZMV5 832 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL9A1-204ENST00000370496 C1orf186Q6ZWK4 172 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 SRGAP1Q7Z6B7 1085 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 ZBTB8OSQ8IWT0 167 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 DEPTORQ8TB45 409 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 LRRC15Q8TF66 581 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 LINC01599Q8WXQ3 324 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 TMX1Q9H3N1 280 aa16.42■□□□□ 0.22
COL9A1-204ENST00000370496 PIN4Q9Y237 131 aaKnown RBP16.42■□□□□ 0.22
COL9A1-204ENST00000370496 GRXCR1A8MXD5 290 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 NAMPTP43490 491 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 SMAD3P84022 425 aaKnown RBP16.41■□□□□ 0.22
COL9A1-204ENST00000370496 DMP1Q13316 513 aaPredicted RBP16.41■□□□□ 0.22
COL9A1-204ENST00000370496 RESP18Q5W5W9 173 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 FAM117BQ6P1L5 589 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 HERC6Q8IVU3 1022 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 PHOSPHO2Q8TCD6 241 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 BSNDQ8WZ55 320 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 ADAM2Q99965 735 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 ZBED2Q9BTP6 218 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 PANK2Q9BZ23 570 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 C2orf40Q9H1Z8 148 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 TSPYL2Q9H2G4 693 aaPredicted RBP16.41■□□□□ 0.22
COL9A1-204ENST00000370496 GDPD2Q9HCC8 539 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 CHMP5Q9NZZ3 219 aa16.41■□□□□ 0.22
COL9A1-204ENST00000370496 A0A087X0B3 334 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.4■□□□□ 0.22
COL9A1-204ENST00000370496 SOX1O00570 391 aaPredicted RBP16.4■□□□□ 0.22
COL9A1-204ENST00000370496 TBCAO75347 108 aaKnown RBP16.4■□□□□ 0.22
COL9A1-204ENST00000370496 ZSCAN20P17040 1043 aaPredicted RBP16.4■□□□□ 0.22
COL9A1-204ENST00000370496 PTENP60484 403 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 RAB30Q15771 203 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 TPRNQ4KMQ1 711 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 FAM43BQ6ZT52 329 aaPredicted RBP16.4■□□□□ 0.22
COL9A1-204ENST00000370496 TMCO2Q7Z6W1 182 aaPredicted RBP16.4■□□□□ 0.22
COL9A1-204ENST00000370496 DHX58Q96C10 678 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 REEP2Q9BRK0 252 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 NFKBIZQ9BYH8 718 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 MINDY3Q9H8M7 445 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 POLD4Q9HCU8 107 aa16.4■□□□□ 0.22
COL9A1-204ENST00000370496 NPHP3-ACAD11A0A0J9YXS1 232 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 CCDC169A6NNP5 214 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 TLL1O43897 1013 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 MGEA5O60502 916 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 UPP2O95045 317 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 LIG1P18858 919 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 RABGGTBP53611 331 aa16.39■□□□□ 0.21
COL9A1-204ENST00000370496 PEX3P56589 373 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms