RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ADGRL3Q9HAR2 1447 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 NEMP1O14524 444 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZNF197O14709 1029 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZRANB2O95218 330 aaKnown RBP eCLIP6.89□□□□□ -1.31
UPF2-201ENST00000356352 KRT8P05787 483 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 KRT4P19013 534 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 LAMB3Q13751 1172 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 TRADDQ15628 312 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 NBPF9Q3BBW0 867 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 LCA5Q86VQ0 697 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 PPP1R2P1Q96PQ5 205 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 MAP3K20Q9NYL2 800 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 ANAPC7Q9UJX3 599 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZBTB1Q9Y2K1 713 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ARHGEF5Q12774 1597 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ZBBXA8MT70 800 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 ARHGEF9O43307 516 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 MAN1A2O60476 641 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 CUL4AQ13619 759 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 MFSD14CQ5VZR4 134 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 TIPINQ9BVW5 301 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.89□□□□□ -1.31
UPF2-201ENST00000356352 PYCARDQ9ULZ3 195 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 PFASO15067 1338 aa6.89□□□□□ -1.31
UPF2-201ENST00000356352 GTPBP10A4D1E9 387 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 USP17L5A8MUK1 530 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 GYG2O15488 501 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 BNIP3LO60238 219 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 USP17L8P0C7I0 530 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 OCM2P0CE71 109 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 OCMP0CE72 109 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 PEX19P40855 299 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 GRIN1Q05586 938 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 HEATR6Q6AI08 1181 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 EPM2AIP1Q7L775 607 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 DDX17Q92841 729 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 BPIFA3Q9BQP9 254 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 MRPL4Q9BYD3 311 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 FAM49AQ9H0Q0 323 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 BHMT2Q9H2M3 363 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 DYRK4Q9NR20 520 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 ZFP69BQ9UJL9 534 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SUGT1Q9Y2Z0 365 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SAMD9Q5K651 1589 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 GOLGA8IPA6NC78 632 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SEC31AO94979 1220 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 NR3C1P04150 777 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 KRT16P08779 473 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 MARK3P27448 753 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 CHRNA3P32297 505 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 ROR1Q01973 937 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 VEPH1Q14D04 833 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 KRT31Q15323 416 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 PPP6R3Q5H9R7 873 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 SLC27A3Q5K4L6 730 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SZRD1Q7Z422 152 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 CATSPER1Q8NEC5 780 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 TTC17Q96AE7 1141 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 ASIC4Q96FT7 647 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 AP1M1Q9BXS5 423 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 WNT8AQ9H1J5 351 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SPTLC3Q9NUV7 552 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 PPARGC1AQ9UBK2 798 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 PLAAQ9Y263 795 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 WDR91A4D1P6 747 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 FAM187AA6NFU0 413 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 RASA4BC9J798 803 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 RASA4O43374 803 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SLC26A4O43511 780 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 MMEP08473 750 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 RAP1GDS1P52306 607 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 AP2B1P63010 937 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 RESTQ13127 1097 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 LBRQ14739 615 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 ADCK5Q3MIX3 580 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 NUGGCQ68CJ6 796 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 TWF2Q6IBS0 349 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 NBPF10Q6P3W6 841 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 PADI6Q6TGC4 694 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 PARD6BQ9BYG5 372 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 SAMSN1Q9NSI8 373 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 MRGBPQ9NV56 204 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 PIM2Q9P1W9 311 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 M0QYV0 167 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 RAD17O75943 681 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 MKRN3Q13064 507 aaKnown RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 CASP8Q14790 479 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 PFKFB3Q16875 520 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 EEPD1Q7L9B9 569 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 ZNF589Q86UQ0 364 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 KSR1Q8IVT5 923 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 NR1H4Q96RI1 486 aaPredicted RBP6.88□□□□□ -1.31
UPF2-201ENST00000356352 ZSWIM5Q9P217 1185 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 ASAP1Q9ULH1 1129 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 PCDHB6Q9Y5E3 794 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 TMEM94Q12767 1356 aa6.88□□□□□ -1.31
UPF2-201ENST00000356352 A0A0G2JND7 137 aa6.87□□□□□ -1.31
UPF2-201ENST00000356352 LGALS16A8MUM7 142 aa6.87□□□□□ -1.31
UPF2-201ENST00000356352 PIK3R2O00459 728 aa6.87□□□□□ -1.31
UPF2-201ENST00000356352 ACSL3O95573 720 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms