RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ZNF536O15090 1300 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 PLXNA3P51805 1871 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 DENND4CQ5VZ89 1909 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 KRTAP9-6A0A140TA67 174 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 A0A1W2PRG0 241 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 SHTN1A0MZ66 631 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ANKRD62A6NC57 917 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 H3BRJ5 948 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ADCY3O60266 1144 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 PRDM1O75626 825 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 OFD1O75665 1012 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 RGS9O75916 674 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 DDAH1O94760 285 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 UBOX5O94941 541 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 SMARCA1P28370 1054 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZNF75DP51815 510 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZCWPW2Q504Y3 356 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZC3H12AQ5D1E8 599 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 ANO1Q5XXA6 986 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 E4F1Q66K89 784 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 IGF2-ASQ6U949 168 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 NOP9Q86U38 636 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 ANKRD18AQ8IVF6 992 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 NOSTRINQ8IVI9 506 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 C17orf53Q8N3J3 647 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 CACTINQ8WUQ7 758 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZDHHC15Q96MV8 337 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 NAP1L5Q96NT1 182 aaPredicted RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 FERD3LQ96RJ6 166 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 BCAS3Q9H6U6 928 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 AATFQ9NY61 560 aaKnown RBP eCLIP2.66□□□□□ -1.98
VPS54-202ENST00000354504 USP25Q9UHP3 1055 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 CD2APQ9Y5K6 639 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 DDX49Q9Y6V7 483 aaKnown RBP2.66□□□□□ -1.98
VPS54-202ENST00000354504 CASP8AP2Q9UKL3 1982 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ASTN1O14525 1302 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 PLXNA4Q9HCM2 1894 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 ZMYM2Q9UBW7 1377 aa2.66□□□□□ -1.98
VPS54-202ENST00000354504 EVPLQ92817 2033 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 ZNF213O14771 459 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 PDHBP11177 359 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 PTMSP20962 102 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 L1CAMP32004 1257 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 RPL6Q02878 288 aaKnown RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 CYP4F3Q08477 520 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 MOGSQ13724 837 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 GNL2Q13823 731 aaKnown RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 EZH2Q15910 746 aaKnown RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 IMMTQ16891 758 aaKnown RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 MSL1Q68DK7 614 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 STYK1Q6J9G0 422 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 CDC42EP5Q6NZY7 148 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 JAMLQ86YT9 394 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 REXO1Q8N1G1 1221 aaKnown RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 REPS2Q8NFH8 660 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 BHLHE22Q8NFJ8 381 aaPredicted RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 PIBF1Q8WXW3 757 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 ANKRD7Q92527 254 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 CLUHP3Q96NS8 147 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 TMEM47Q9BQJ4 181 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 SPZ1Q9BXG8 430 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 FGFBP2Q9BYJ0 223 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 EHMT1Q9H9B1 1298 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 BLOC1S4Q9NUP1 217 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 TJP2Q9UDY2 1190 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 SUSD2Q9UGT4 822 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 KCNJ14Q9UNX9 436 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 SMC3Q9UQE7 1217 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 REXO2Q9Y3B8 237 aaKnown RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 SLC4A4Q9Y6R1 1079 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 RPTORQ8N122 1335 aa2.65□□□□□ -1.98
VPS54-202ENST00000354504 TRIP12Q14669 1992 aaPredicted RBP2.65□□□□□ -1.98
VPS54-202ENST00000354504 LTBP2Q14767 1821 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 ALPK3Q96L96 1907 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 IGLV3-22A0A075B6J6 115 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 CYP3A7-CYP3A51PA0A087WV96 503 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 A0A1B0GVL5 298 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 MEIS2O14770 477 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 ATP1A3P13637 1013 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 PTPRAP18433 802 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 MCCP23508 829 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 CYP3A7P24462 503 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 HIBADHP31937 336 aaKnown RBP2.65□□□□□ -1.99
VPS54-202ENST00000354504 GRK4P32298 578 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 HMGN5P82970 282 aaKnown RBP2.65□□□□□ -1.99
VPS54-202ENST00000354504 AMPD3Q01432 767 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 NR1I3Q14994 352 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 ANO6Q4KMQ2 910 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 ARSHQ5FYA8 562 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 MIIPQ5JXC2 388 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 TRAPPC3LQ5T215 181 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 HHIPL2Q6UWX4 724 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 BTNL9Q6UXG8 535 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 UNC5AQ6ZN44 842 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 DGKHQ86XP1 1220 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 CLEC10AQ8IUN9 316 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 REXO1L1PQ8IX06 675 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 UBR7Q8N806 425 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 BORCS6Q96GS4 357 aa2.65□□□□□ -1.99
VPS54-202ENST00000354504 MRFAP1L1Q96HT8 127 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms