RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 RRS1Q15050 365 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 HAUS6Q7Z4H7 955 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 TNKSO95271 1327 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 F8A1P23610 371 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 GPD2P43304 727 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 RPL5P46777 297 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 IL23RQ5VWK5 629 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PDPRQ8NCN5 879 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ING3Q9NXR8 418 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 EURLQ9NYK6 297 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 NUTM2BA6NNL0 878 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 NUTM2EB1AL46 878 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 FOXN3O00409 490 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 KMOO15229 486 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ADCY6O43306 1168 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 IDEP14735 1019 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 STX2P32856 288 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PURAQ00577 322 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 SNX32Q86XE0 403 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ANKRD13CQ8N6S4 541 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 SNX9Q9Y5X1 595 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 TMEM221A6NGB7 291 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 BTBD18B2RXH4 712 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 F8W031 263 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 GLRX3O76003 335 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 LSP1P33241 339 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PTGS2P35354 604 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ATP6V0D1P61421 351 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 STX5Q13190 355 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ATG16L1Q676U5 607 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 FANCD2Q9BXW9 1451 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 SAR1AQ9NR31 198 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 CNPY2Q9Y2B0 182 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PASKQ96RG2 1323 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 MYL5Q02045 173 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ATG14Q6ZNE5 492 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PTBP2Q9UKA9 531 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 F13A1P00488 732 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 FGAP02671 866 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 NR1D1P20393 614 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 EEF1B2P24534 225 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 THOC5Q13769 683 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 ZYG11AQ6WRX3 759 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 GABBR1Q9UBS5 961 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 FAM8A1Q9UBU6 413 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PRG3Q9Y2Y8 225 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 CCT3P49368 545 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 CLK1P49759 484 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 PPP2R5BQ15173 497 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 NAA35Q5VZE5 725 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 SND1Q7KZF4 910 aaKnown RBP eCLIP4□□□□□ -1.77
SYNE2-202ENST00000344113 TMA16Q96EY4 203 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 CEP295NLQ96MC4 621 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 RGS12O14924 1447 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 TRIM64CA6NLI5 447 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 CUTAO60888 179 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 LRRC39Q96DD0 335 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ITM2BQ9Y287 266 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 C2orf74A8MZ97 194 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 CD53P19397 219 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 CCT2P78371 535 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 ZNF423Q2M1K9 1284 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 TCP11L2Q8N4U5 519 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 DNAAF3Q8N9W5 541 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 RNPEPL1Q9HAU8 725 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 UBN1Q9NPG3 1134 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 DNAAF2Q9NVR5 837 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 PPEF1O14829 653 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 RGS5O15539 181 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 FOXD4Q12950 439 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 SFMBT2Q5VUG0 894 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 MRPS27Q92552 414 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 NUDCD1Q96RS6 583 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 IFT52Q9Y366 437 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 GTPBP10A4D1E9 387 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 DNALI1O14645 258 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 NUP62P37198 522 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 VHLP40337 213 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PPP2R5DQ14738 602 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 C6orf52Q5T4I8 152 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 NDNQ99608 321 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ANKHQ9HCJ1 492 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 INTS9Q9NV88 658 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 COG6Q9Y2V7 657 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 SPEF1Q9Y4P9 236 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 GNA14O95837 355 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ATP4AP20648 1035 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 THOP1P52888 689 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 HERC4Q5GLZ8 1057 aaPredicted RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 OLFML2BQ68BL8 750 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4□□□□□ -1.77
SYNE2-202ENST00000344113 MIF4GDA9UHW6 222 aaKnown RBP4□□□□□ -1.77
SYNE2-202ENST00000344113 ATP6V1G1O75348 118 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 EGFRP00533 1210 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 ABCG1P45844 678 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 CYP4F8P98187 520 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 WASHC5Q12768 1159 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 PACS1Q6VY07 963 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 VTI1AQ96AJ9 217 aa4□□□□□ -1.77
SYNE2-202ENST00000344113 NACC2Q96BF6 587 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms