RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TAS2R14Q9NYV8 317 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 ADAMTSL1Q8N6G6 1762 aa24.24■■□□□ 1.47
TRIM28-202ENST00000341753 HOXA7P31268 230 aaPredicted RBP24.23■■□□□ 1.47
TRIM28-202ENST00000341753 PTENP60484 403 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 DUPD1Q68J44 220 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 CATSPER3Q86XQ3 398 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 EPS8L3Q8TE67 593 aaKnown RBP24.23■■□□□ 1.47
TRIM28-202ENST00000341753 C18orf8Q96DM3 657 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 CD2APQ9Y5K6 639 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 EIF3BP55884 814 aaKnown RBP24.23■■□□□ 1.47
TRIM28-202ENST00000341753 CDC42EP5Q6NZY7 148 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 SEMA4AQ9H3S1 761 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 TRAF3IP3Q9Y228 551 aa24.23■■□□□ 1.47
TRIM28-202ENST00000341753 RGS16O15492 202 aaPredicted RBP24.22■■□□□ 1.47
TRIM28-202ENST00000341753 FGFR4P22455 802 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 MRPL12P52815 198 aaKnown RBP24.22■■□□□ 1.47
TRIM28-202ENST00000341753 CYP4A11Q02928 519 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 KLRC3Q07444 240 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 MKRN4PQ13434 485 aaPredicted RBP24.22■■□□□ 1.47
TRIM28-202ENST00000341753 PALB2Q86YC2 1186 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 ANKS4BQ8N8V4 417 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 CCDC63Q8NA47 563 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 OLIG1Q8TAK6 271 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 ALG3Q92685 438 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 STAMBPL1Q96FJ0 436 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 CHORDC1Q9UHD1 332 aaPredicted RBP24.22■■□□□ 1.47
TRIM28-202ENST00000341753 SERPINB13Q9UIV8 391 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 GHRP10912 638 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 SHMT1P34896 483 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 MMP14P50281 582 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 ZDHHC24Q6UX98 284 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 JAMLQ86YT9 394 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 PABPC3Q9H361 631 aaKnown RBP24.22■■□□□ 1.47
TRIM28-202ENST00000341753 ABCF3Q9NUQ8 709 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 INTS9Q9NV88 658 aaKnown RBP24.22■■□□□ 1.47
TRIM28-202ENST00000341753 BCS1LQ9Y276 419 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 L3MBTL1Q9Y468 752 aa24.22■■□□□ 1.47
TRIM28-202ENST00000341753 ASTN1O14525 1302 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 A0A0A6YYK5 440 aaPredicted RBP24.21■■□□□ 1.47
TRIM28-202ENST00000341753 GCNT3O95395 438 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 TACO1Q9BSH4 297 aaKnown RBP24.21■■□□□ 1.47
TRIM28-202ENST00000341753 COA1Q9GZY4 146 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 TMEM110-MUSTN1A8MSY1 372 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 G3V3G9 751 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 GBP2P32456 591 aaPredicted RBP24.21■■□□□ 1.47
TRIM28-202ENST00000341753 STAT1P42224 750 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 ZNF543Q08ER8 600 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 DCAF8Q5TAQ9 597 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 BANK1Q8NDB2 785 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 THAP2Q9H0W7 228 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 AGAP1Q9UPQ3 857 aa24.21■■□□□ 1.47
TRIM28-202ENST00000341753 CALUO43852 315 aaPredicted RBP24.2■■□□□ 1.47
TRIM28-202ENST00000341753 PAX7P23759 505 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 MMP13P45452 471 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 NBPF9Q3BBW0 867 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 KRT27Q7Z3Y8 459 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 COL23A1Q86Y22 540 aaPredicted RBP24.2■■□□□ 1.47
TRIM28-202ENST00000341753 KIAA0825Q8IV33 1275 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 KSR1Q8IVT5 923 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 MGARPQ8TDB4 240 aa24.2■■□□□ 1.47
TRIM28-202ENST00000341753 DBR1Q9UK59 544 aaKnown RBP24.2■■□□□ 1.47
TRIM28-202ENST00000341753 GCFC2P16383 781 aaKnown RBP24.2■■□□□ 1.46
TRIM28-202ENST00000341753 POLD1P28340 1107 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 SLC8A1P32418 973 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 NOVP48745 357 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 PLS1Q14651 629 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 LRRC14Q15048 493 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 PRR16Q569H4 304 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 KIAA1755Q5JYT7 1200 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 SLC27A3Q5K4L6 730 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 CTNNBL1Q8WYA6 563 aaPredicted RBP24.2■■□□□ 1.46
TRIM28-202ENST00000341753 RFFLQ8WZ73 363 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 COG5Q9UP83 839 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 RPTORQ8N122 1335 aa24.2■■□□□ 1.46
TRIM28-202ENST00000341753 KLRG2A4D1S0 409 aaPredicted RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 NAA25Q14CX7 972 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 CENPTQ96BT3 561 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 SAMD15Q9P1V8 674 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 KIAA0391O15091 583 aaKnown RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 KIF1CO43896 1103 aaKnown RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 FERP16591 822 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 MARCKSL1P49006 195 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 SNAP25P60880 206 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 MYO1EQ12965 1108 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 DRAP1Q14919 205 aaPredicted RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 APOBEC3HQ6NTF7 200 aaKnown RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 SLC30A5Q8TAD4 765 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 P3H4Q92791 437 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 THOC1Q96FV9 657 aaKnown RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 SLC12A4Q9UP95 1085 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 IGKV6D-41A0A0C4DH26 115 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 GOLGA6L10A0A0M3HER8 536 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 TTLL1O95922 423 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 TAL1P17542 331 aaPredicted RBP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 ARHGAP44Q17R89 818 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 TLDC1Q6P9B6 456 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 PIGWQ7Z7B1 504 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 MAGEC3Q8TD91 643 aa24.19■■□□□ 1.46
TRIM28-202ENST00000341753 ZNF622Q969S3 477 aaKnown RBP eCLIP24.19■■□□□ 1.46
TRIM28-202ENST00000341753 NUDT17P0C025 328 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms