RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MAP4K3Q8IVH8 894 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 RDH13Q8NBN7 331 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 TMEM143Q96AN5 459 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 CBWD1Q9BRT8 395 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 DHX33Q9H6R0 707 aaKnown RBP14.65□□□□□ -0.06
HMGB1-202ENST00000339872 CGNQ9P2M7 1197 aaKnown RBP14.65□□□□□ -0.06
HMGB1-202ENST00000339872 CPA4Q9UI42 421 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 EXOC7Q9UPT5 735 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 GOLGA6L9A6NEM1 432 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 LRRC53A6NM62 1247 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 IGF2BP3O00425 579 aaKnown RBP eCLIP14.65□□□□□ -0.06
HMGB1-202ENST00000339872 MAPK4P31152 587 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 APBA1Q02410 837 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 MYBPC2Q14324 1141 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 GRB14Q14449 540 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 RRAGAQ7L523 313 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 PLEKHH3Q7Z736 793 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 ACRBPQ8NEB7 543 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 FAM167AQ96KS9 214 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 NTPCRQ9BSD7 190 aaKnown RBP14.65□□□□□ -0.06
HMGB1-202ENST00000339872 VTA1Q9NP79 307 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 NLRC4Q9NPP4 1024 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 CEP72Q9P209 647 aa14.65□□□□□ -0.06
HMGB1-202ENST00000339872 MANSC4A6NHS7 340 aaPredicted RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 LGR5O75473 907 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 ECM2O94769 699 aaPredicted RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 NOL4O94818 638 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 ZNF467Q7Z7K2 595 aaPredicted RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 SAPCD2Q86UD0 394 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 C12orf56Q8IXR9 622 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 BAP1Q92560 729 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 CEP89Q96ST8 783 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 HSPBP1Q9NZL4 362 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 DIS3Q9Y2L1 958 aaKnown RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 ZNF236Q9UL36 1845 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 EMSYQ7Z589 1322 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 NDUFA10O95299 355 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 RFC5P40937 340 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 SNRPFP62306 86 aaKnown RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 TARBP2Q15633 366 aaKnown RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 GJC2Q5T442 439 aaPredicted RBP14.64□□□□□ -0.07
HMGB1-202ENST00000339872 RGMBQ6NW40 437 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 TAPT1Q6NXT6 567 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 PRIMPOLQ96LW4 560 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 EDEM3Q9BZQ6 932 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 PLAGL2Q9UPG8 496 aa14.64□□□□□ -0.07
HMGB1-202ENST00000339872 SIP14410 1827 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 TRIM49P0CI25 452 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 TRIM49CP0CI26 452 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 SLC9A1P19634 815 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 POLR2FP61218 127 aaKnown RBP14.63□□□□□ -0.07
HMGB1-202ENST00000339872 BFSP1Q12934 665 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 TAF1CQ15572 869 aaPredicted RBP14.63□□□□□ -0.07
HMGB1-202ENST00000339872 EXOC3L4Q17RC7 722 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 PDXDC1Q6P996 788 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 SYT10Q6XYQ8 523 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 GPIHBP1Q8IV16 184 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 XXYLT1Q8NBI6 393 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 BBXQ8WY36 941 aaPredicted RBP14.63□□□□□ -0.07
HMGB1-202ENST00000339872 MAML3Q96JK9 1138 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 EPN1Q9Y6I3 576 aaPredicted RBP14.63□□□□□ -0.07
HMGB1-202ENST00000339872 ANKRD63C9JTQ0 380 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 ACTN1P12814 892 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 KRT13P13646 458 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 HNRNPH3P31942 346 aaKnown RBP14.63□□□□□ -0.07
HMGB1-202ENST00000339872 ARHGAP1Q07960 439 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 PPP2R5AQ15172 486 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 GBP6Q6ZN66 633 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 PLPPR4Q7Z2D5 763 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 ASAP3Q8TDY4 903 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 TMEM174Q8WUU8 243 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 GANQ9H2C0 597 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 NHEJ1Q9H9Q4 299 aaPredicted RBP14.63□□□□□ -0.07
HMGB1-202ENST00000339872 LZTFL1Q9NQ48 299 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 GCNT4Q9P109 453 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 ARHGAP28Q9P2N2 729 aa14.63□□□□□ -0.07
HMGB1-202ENST00000339872 ADGRA2Q96PE1 1338 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 A0A0U1RQJ8 604 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 LRRIQ4A6NIV6 560 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 H0YCG3 227 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 GLRA2P23416 452 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 CNGA1P29973 690 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 ADCYAP1R1P41586 468 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 MAMDC4Q6UXC1 1216 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 ZSWIM2Q8NEG5 633 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 KIF18AQ8NI77 898 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 ATP8B4Q8TF62 1192 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 ATRIPQ8WXE1 791 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 BICD1Q96G01 975 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 KATNBL1Q9H079 304 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 PAXBP1Q9Y5B6 917 aa14.62□□□□□ -0.07
HMGB1-202ENST00000339872 HNRNPDLO14979 420 aaKnown RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 MAFO75444 373 aaPredicted RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 SNAI1O95863 264 aaPredicted RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 GH1P01241 217 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 PON1P27169 355 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 CYLC1P35663 651 aaPredicted RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 ARL2P36404 184 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 NAMPTP43490 491 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms