RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PYROXD1Q8WU10 500 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 SPATA17Q96L03 361 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 FAM20AQ96MK3 541 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 NCAPGQ9BPX3 1015 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 ABCB6Q9NP58 842 aa10.9□□□□□ -0.66
CHD3-201ENST00000330494 LCP1P13796 627 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 ALCAMQ13740 583 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 ALX1Q15699 326 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 CCDC144BQ3MJ40 725 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 THEM5Q8N1Q8 247 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 OR6J1Q8NGC5 347 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 GCNAQ96QF7 691 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 EMSYQ7Z589 1322 aa10.9□□□□□ -0.67
CHD3-201ENST00000330494 MED14O60244 1454 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 GPC4O75487 556 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 MT-ND3P03897 115 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 GNA15P30679 374 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 DBN1Q16643 649 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 NFRKBQ6P4R8 1299 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ZNF34Q8IZ26 560 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 MTMR4Q9NYA4 1195 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 CEP72Q9P209 647 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 MOSPD1Q9UJG1 213 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 SNX24Q9Y343 169 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 GNAT1P11488 350 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 COPB2P35606 906 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 RWDD2BP57060 319 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ASPHQ12797 758 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 MKRN4PQ13434 485 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 ANKRD40Q6AI12 368 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ZNF579Q8NAF0 562 aaKnown RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 INTS2Q9H0H0 1204 aaKnown RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 RBAKQ9NYW8 714 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 INTUQ9ULD6 942 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 TECPR2O15040 1411 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 PLEKHG2Q9H7P9 1386 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 PI4K2BG5E9Z4 385 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 HUS1O60921 280 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 PMLP29590 882 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 KRT76Q01546 638 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 BAATQ14032 418 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 EZH2Q15910 746 aaKnown RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 IGDCC4Q8TDY8 1250 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 KIF12Q96FN5 646 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 FAM81BQ96LP2 452 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 FTLP02792 175 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 CTSHP09668 335 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 NNTQ13423 1086 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 RNF149Q8NC42 400 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 CERKQ8TCT0 537 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ABTB1Q969K4 478 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 SAYSD1Q9NPB0 183 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 SLC9A2Q9UBY0 812 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ZNRF3Q9ULT6 936 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 PTPRMP28827 1452 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 EIF3CLB5ME19 914 aaKnown RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 WDR46O15213 610 aaKnown RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 MOCS2O96007 188 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 MYBP10242 640 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ACOT2P49753 483 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 NSUN2Q08J23 767 aaKnown RBP eCLIP10.89□□□□□ -0.67
CHD3-201ENST00000330494 RABL6Q3YEC7 729 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 NEDD1Q8NHV4 660 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 EIF3CQ99613 913 aaKnown RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 ZMYND12Q9H0C1 365 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 JCADQ9P266 1359 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 NDUFB10O96000 172 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 NCF2P19878 526 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 ABCD1P33897 745 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 VPS72Q15906 364 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ARL13BQ3SXY8 428 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 PLA2G4FQ68DD2 849 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 C1orf228Q6PIY5 440 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 RAB44Q7Z6P3 723 aaPredicted RBP10.89□□□□□ -0.67
CHD3-201ENST00000330494 MLXIPLQ9NP71 852 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 FBXO40Q9UH90 709 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 TLK1Q9UKI8 766 aa10.89□□□□□ -0.67
CHD3-201ENST00000330494 ORC4O43929 436 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 CLCN6P51797 869 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 EPB41L4AQ9HCS5 686 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 HACD3Q9P035 362 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 PNPLA6Q8IY17 1366 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 CTNND1O60716 968 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 TXNP10599 105 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 PRPF31Q8WWY3 499 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 MAML1Q92585 1016 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 MRPL4Q9BYD3 311 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 GGA3Q9NZ52 723 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 ZNF70Q9UC06 446 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 SLC8A1P32418 973 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 PSMC5P62195 406 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 MTF1Q14872 753 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 KDELC2Q7Z4H8 507 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 BEST2Q8NFU1 509 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 MED4Q9NPJ6 270 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 FAF1Q9UNN5 650 aaPredicted RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 MRFAP1Q9Y605 127 aa10.88□□□□□ -0.67
CHD3-201ENST00000330494 SART1O43290 800 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 EXOSC10Q01780 885 aaKnown RBP10.88□□□□□ -0.67
CHD3-201ENST00000330494 ANO4Q32M45 955 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms