RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DCAF15Q66K64 600 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 NDEL1Q9GZM8 345 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 CIAO1O76071 339 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 GSPT1P15170 499 aaKnown RBP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 ZHX2Q9Y6X8 837 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PABPC4Q13310 644 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 BBS9Q3SYG4 887 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 RABGAP1LQ5R372 815 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 RFWD2Q8NHY2 731 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 UHMK1Q8TAS1 419 aaKnown RBP15.17■□□□□ 0.02
COL7A1-201ENST00000328333 MYL10Q9BUA6 226 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 BEGAINQ9BUH8 593 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PITPNM2Q9BZ72 1349 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 PCDHA1Q9Y5I3 950 aa15.17■□□□□ 0.02
COL7A1-201ENST00000328333 CATSPER3Q86XQ3 398 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 LINC00301Q8NCQ3 95 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 SNTNA6NMZ2 147 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 HIF1AQ16665 826 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 MTO1Q9Y2Z2 717 aaKnown RBP15.16■□□□□ 0.02
COL7A1-201ENST00000328333 CDY2AQ9Y6F7 541 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 CDY1Q9Y6F8 540 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 SLC4A7Q9Y6M7 1214 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 SLC7A5Q01650 507 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 CCDC85BQ15834 202 aaPredicted RBP15.16■□□□□ 0.02
COL7A1-201ENST00000328333 ADCK5Q3MIX3 580 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 AGBL2Q5U5Z8 902 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 LRRIQ1Q96JM4 1722 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 FTCDO95954 541 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 KRT14P02533 472 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 DDB1Q16531 1140 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 TRPM8Q7Z2W7 1104 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 RDH13Q8NBN7 331 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 SLC26A7Q8TE54 656 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 MAP4K1Q92918 833 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 PALMO75781 387 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 STX3Q13277 289 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 CCT8L2Q96SF2 557 aa15.16■□□□□ 0.02
COL7A1-201ENST00000328333 H2AFYO75367 372 aaKnown RBP15.15■□□□□ 0.02
COL7A1-201ENST00000328333 MECOMQ03112 1051 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 IMPG1Q17R60 797 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 FAF2Q96CS3 445 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 FAM107AO95990 144 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 ZSCAN20P17040 1043 aaPredicted RBP15.15■□□□□ 0.02
COL7A1-201ENST00000328333 CCDC103Q8IW40 242 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 TSPYL6Q8N831 410 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 STAMQ92783 540 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 FAM192AQ9GZU8 254 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.15■□□□□ 0.02
COL7A1-201ENST00000328333 ENOSF1Q7L5Y1 443 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 CLIC4Q9Y696 253 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 FAM47DPA6NHR8 397 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 GFPT2O94808 682 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 IP6K1Q92551 441 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 CATSPER2Q96P56 530 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 EPC1Q9H2F5 836 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 ANTXR1Q9H6X2 564 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 PLEKHG1Q9ULL1 1385 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 EIF2S1P05198 315 aaKnown RBP15.15■□□□□ 0.02
COL7A1-201ENST00000328333 VHLP40337 213 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 USP14P54578 494 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 UGP2Q16851 508 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 RCSD1Q6JBY9 416 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 TOGARAM2Q6ZUX3 1019 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 TLK2Q86UE8 772 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 EFHBQ8N7U6 833 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 HIPK4Q8NE63 616 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 JARID2Q92833 1246 aaPredicted RBP15.15■□□□□ 0.02
COL7A1-201ENST00000328333 OLFM1Q99784 485 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 CTSWP56202 376 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 GRM1Q13255 1194 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 ZBTB41Q5SVQ8 909 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 WLSQ5T9L3 541 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 IFNL3Q8IZI9 196 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 UBE2TQ9NPD8 197 aaPredicted RBP15.15■□□□□ 0.02
COL7A1-201ENST00000328333 MLH3Q9UHC1 1453 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 WDR91A4D1P6 747 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 ORC4O43929 436 aa15.15■□□□□ 0.02
COL7A1-201ENST00000328333 A0A0D9SFI3 127 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 FAM47EQ6ZV65 393 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 FANCEQ9HB96 536 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 STK36Q9NRP7 1315 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 BTBD18B2RXH4 712 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 PJA2O43164 708 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 METTL23Q86XA0 190 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 TAGAPQ8N103 731 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 ADGRL2O95490 1459 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 TTLL1O95922 423 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 MDH1P40925 334 aaKnown RBP15.14■□□□□ 0.01
COL7A1-201ENST00000328333 TSTA3Q13630 321 aaPredicted RBP15.14■□□□□ 0.01
COL7A1-201ENST00000328333 KRT72Q14CN4 511 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 NDUFA5Q16718 116 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 GTSE1Q9NYZ3 720 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 A0A1W2PQC6 194 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 ANP32DO95626 131 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 RALBP11234 206 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 LIFRP42702 1097 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 INAQ16352 499 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 TSPAN17Q96FV3 270 aa15.14■□□□□ 0.01
COL7A1-201ENST00000328333 GPR108Q9NPR9 543 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms